FC920726

Overview
NameFC920726
Unique NameFC920726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920726_ssr139 microsatellite FC920726_ssr139:139..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14184 contig Ccv1_Contig14184:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 3 
Query:  330 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPS 119
[Close]
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  318 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPS 447
The following BLAST results are available for this feature:
BLAST of FC920726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH2.087e-1339.24Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH3.013e-1237.35Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32012C05EF RVDevelop1 Citrus clementina cDNA clone C32012C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920726 ID=FC920726; Name=FC920726; organism=Citrus clementina; type=EST; length=653bp
GCGAGAAAAAGTGAAGTAAGCAACCACGAAAAAAAAAAAAAGCACTCACA
AACCGACACCTTCGTCCCACCGCCATTTGTCTACATATAATCCCCCTTGC
ATTTCTCACAATCTCCTATAGCGTCACGAACTTTTTCATCTCTCTCTCAG
TCCCTCTCAAAGGCCTCAGCTTAGCTGCTGTGTGTGTTGTGACAAACTTT
TCTCGGAGCCAAACAAGCAAGTATTTGTTATTATTATCTCTTCTCTAAGC
TTCTTTTGCTCATTCAGTGATGGCTGTTTTGGTGCTTTTAGCTCTCTTCC
TTGGCTTCACTGGGCATTCAACTGCAAACTGGTGTGTTTGCAAAGATGGA
GTGGGTGACCCAGTTTTACAAAAAGCTTTGGACTATGCTTGTGGAGCTGG
GGCTGATTGTAACCCTATCCATTCCAATGGGCCTTGTTACAACCCCAACA
CTGTCAAAGCTCACTGCAGTTATGCTGTCAACAGCTATTTCCAGAGAAAG
GGTCAAGCTCAAGGCTCTTGTGATTTTTCCGGAAGTGCAACCGTTGCCAC
TACCGATCCCAGCACTGCTGGCTGTTCTTATCCTTCAAGTGCCAGCACTT
CAGGCACCACCTCAACAACACCAGTCACAGGTACTCCAGGCACAACCACA
CCC
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