FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL11_ARATH (Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 75/144 (52.08%), Postives = 107/144 (74.31%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V+LSTFVAVC ++ +G A GY+S A++ I  +L LS+A++S FGS L +G  +GA+ SG++A  +GRR T+   D  C+ GW+ I F+K  +WLDLGR+ +G G+GL+SYVVPVYIA+ITPK++RG FT  +QL+   GVS+ Y
Sbjct:   30 VILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIY 173          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL1_ARATH (Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 79/144 (54.86%), Postives = 107/144 (74.31%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++LST VAV GS+V+G A+ YSSPAQS I  +LGLSVA+YS F S++T+G MI A  SGKIA  IGRR TM  +D+ CI GW+ + F+     L++GR  +G+G+GL+SYVVPVYIA+ITPK  RGGF+  +QL+   G+S+ +
Sbjct:   27 LLLSTSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISYVVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMF 170          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL6_ARATH (Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.470e-38
Identity = 75/145 (51.72%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V+    +   G   FG   GYSSP Q+ IT DLGL+V+EYS+FGS+  +GAM+GAI SG+IA+YIGR+G++  + I  IIGW+ I F+K   +L +GRLL G+G+G++SY VPVYIA+I P+N+RGG  +V+QL + IG+ + YL
Sbjct:   48 VLACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYL 192          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL12_ARATH (Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++ STF+ V  S+ FG+AIGY++   S I +DL LS+A++SLFGS+ T G MIGAI S K A   G + T+  +D+ CI GW+ I  +K   WLD+GR LVG G+GL+SYVVPVYIA+ITPK++RG FT  +QL+   GV++ Y
Sbjct:   26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVY 169          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL10_ARATH (Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37
Identity = 74/144 (51.39%), Postives = 104/144 (72.22%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V+LSTFVAVC S+ +G A GY+S A++ I  +L LS+A++S FGS L +G  +GA+ SG++A  +GRR T+   D+ CI GW+ I F+K   WLDLGR+ +G G+GL SYVVPVYIA+ITPK++RG F+    L+   G+S+ Y
Sbjct:   21 VILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIY 164          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL4_ARATH (Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.175e-37
Identity = 72/145 (49.66%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V+    +   G   FG   GYSSP Q+ IT DLGL+V+EYS+FGS+  +GAM+GAI SG+IA+Y+GR+G++  + I  IIGW+ I F+K   +L +GRLL G+G+G++SY VPVYIA+I P+ +RG   +V+QL + IG+ + YL
Sbjct:   49 VLACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVNQLSVTIGIMLAYL 193          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL15_ARATH (Sugar transporter ERD6-like 15 OS=Arabidopsis thaliana GN=At4g04760 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.065e-36
Identity = 70/143 (48.95%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  149 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            VL+  V  CG++ FG  IGYS+P Q+ I  DL LS+A+YSLFGSILT+G ++GA++ GK+ D +GR  T+  ++I+ +IGW  I F+K  W LDLGRLL G  +G+  Y+ PVYI +I P+NLRG  ++  QL   +G+S+ Y
Sbjct:   32 VLAFIVGSCGAFAFGCIIGYSAPTQTSIMKDLNLSIADYSLFGSILTVGLILGALICGKLTDLVGRVKTIWITNILFVIGWFAIAFAKGVWLLDLGRLLQGISIGISVYLGPVYITEIAPRNLRGAASSFAQLFAGVGISVFY 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL9_ARATH (Sugar transporter ERD6-like 9 OS=Arabidopsis thaliana GN=At3g05155 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.425e-35
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            +V +TF+ V  S+ FG A+G+++   + I  DL LS+ ++S+FGS+LT G MIGA+ S  IAD  G + T+  +++ CI GW+ I  +K   WLDLGR  VG G+GLLSYVVPVYIA+ITPK +RG FT  +QL+   GV+  Y
Sbjct:   27 LVFTTFIIVSASFSFGVALGHTAGTMASIMEDLDLSITQFSVFGSLLTFGGMIGALFSATIADSFGCKMTLWITEVFCISGWLAIALAKNIIWLDLGRFFVGIGVGLLSYVVPVYIAEITPKTVRGTFTFSNQLLQNCGVATAY 170          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL14_ARATH (Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana GN=At4g04750 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.090e-33
Identity = 66/143 (46.15%), Postives = 102/143 (71.33%), Query Frame = 2
Query:  149 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            VL+  V  CG+  FG  +GY++P QS I  DL LS+A++S FGSILT+G ++GA++ GK+AD +GR  T+  ++I+ +IGW+ I F+K    LDLGRLL G  +G+ SY+ P+YI+++ P+NLRG  +++ QL + +G+S  Y
Sbjct:   37 VLAFTVGSCGALSFGCIVGYTAPTQSSIMKDLNLSIADFSFFGSILTVGLILGALICGKLADLVGRVYTIWITNILVLIGWLAIAFAKDVRLLDLGRLLQGISVGISSYLGPIYISELAPRNLRGAASSLMQLFVGVGLSAFY 179          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR6_HUMAN (Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens GN=SLC2A6 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPA----QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V L+TF AV G++ FG A+ Y+SP     +  +  DL L+ ++ S FGS+ T+GA  G + +  + D +GR+ ++ FS +    G+ ++  +   W L LGR L G+  GL +  +PVY+++I P  +RG      QLM   G    Y
Sbjct:   38 VFLATFAAVLGNFSFGYALVYTSPVIPALERSLDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGAHGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRGALGATPQLMAVFGSLSLY 185          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EDL11_ARATH1.018e-3952.08Sugar transporter ERD6-like 11 OS=Arabidopsis thal... [more]
ERDL1_ARATH1.736e-3954.86Sugar transporter ERD6-like 1 OS=Arabidopsis thali... [more]
ERDL6_ARATH1.470e-3851.72Sugar transporter ERD6-like 6 OS=Arabidopsis thali... [more]
EDL12_ARATH7.294e-3852.08Sugar transporter ERD6-like 12 OS=Arabidopsis thal... [more]
EDL10_ARATH1.244e-3751.39Sugar transporter ERD6-like 10 OS=Arabidopsis thal... [more]
ERDL4_ARATH6.175e-3749.66Sugar transporter ERD6-like 4 OS=Arabidopsis thali... [more]
EDL15_ARATH3.065e-3648.95Sugar transporter ERD6-like 15 OS=Arabidopsis thal... [more]
ERDL9_ARATH4.425e-3549.31Sugar transporter ERD6-like 9 OS=Arabidopsis thali... [more]
EDL14_ARATH1.090e-3346.15Sugar transporter ERD6-like 14 OS=Arabidopsis thal... [more]
GTR6_HUMAN3.404e-1934.46Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
back to top