FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: RGT2_YEAST (High-affinity glucose transporter RGT2 OS=Saccharomyces cerevisiae GN=RGT2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIG-------------YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI-IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            V++  FVAV G ++FG   G             Y +P  S  T       ++ ++  S L++G   GA+++  I+D  GR+ T+ FS  V   IG  + V S     L +GR++ G G+G++S VVP+Y A+   KNLRG   + +Q  I IG+
Sbjct:  100 VLVGIFVAV-GGFLFGYDTGLINSITDMPYVKTYIAPNHSYFTT------SQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFSIGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIGL 246          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  290 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            IGA +    SG +AD++GRR  +  S I+  +G +++++S   + L LGRLL G+G+GL+  +VP+YI++  P  +RG   T+ Q     G+ ++Y
Sbjct:   54 IGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTLPQFTGSGGMFLSY 149          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_MOUSE (Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +SL  +I ++G MIG+   G   +  GRR +M   +++  +  V++ FSK       L LGR ++G   GL +  VP+Y+ +++P  LRG   T+HQL I +G+
Sbjct:   65 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGI 168          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_HUMAN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +SL  +I ++G MIG+   G   +  GRR +M   +++  +  V++ FSK       L LGR ++G   GL +  VP+Y+ +++P  LRG   T+HQL I +G+
Sbjct:   65 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGI 168          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: KHT2_KLULA (Hexose transporter 2 OS=Kluyveromyces lactis GN=KHT2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  248 LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            LS     L  SI  IG  IG I+  K+ D  GRR  +    ++ ++G +I + S   W+   +GR++ G G+G +S + P+ I++  PK++RG   + +QLMI  G+ + Y
Sbjct:  107 LSNVRTGLIVSIFNIGCAIGGIILSKLGDMYGRRIGLMIVVLIYVVGIIIQIASIDKWYQYFIGRIISGLGVGGISVLSPMLISETAPKHIRGTLVSFYQLMITFGIFLGY 217          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: HXT9_YEAST (Hexose transporter HXT9 OS=Saccharomyces cerevisiae GN=HXT9 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSP--------AQSGITNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V +   +   G ++FG   G  S          + G  ND G   LS     L  SI  IG  IG I+  K+ D  GRR  +     + ++G +I + S   W+   +GR++ G G+G ++ + P+ I+++ PK +RG    ++QLM  +G+ + Y
Sbjct:   61 VAILCLMIAFGGFIFGWDTGTISGFVNLSDFIRRFGQKNDKGTYYLSKVRMGLIVSIFNIGCAIGGIVLSKVGDIYGRRIGLITVTAIYVVGILIQITSINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKQIRGTLVQLYQLMCTMGIFLGY 216          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITND---LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V+   F A  G  +FG   G  S A   I +D   +  +     +  S+   GA++GA + G   D +GRR  +  +D + ++G +I+  +     L +GR+ VG G+G+ S   P+YI++ +P  +RG   + +  +I  G  ++YL
Sbjct:   28 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYL 175          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR12_DANRE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Danio rerio GN=slc2a12 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 41/144 (28.47%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V+ S  VA     + G  +   S A   + + L LS  E       L +GA + ++  G I D+ GRR T+  + ++C++G ++ V   + W L +GR+LVG  + L      +Y A++ P   RG    V++LM+ +G+ + +
Sbjct:   44 VLCSVSVACLSGLLMGYEMSLISGALLQLRDVLTLSCPEQEQVVGSLLLGAFLLSLGGGTILDHYGRRFTIILTALLCVLGTLLSVCVVSFWALVVGRMLVGMSVALSGTASCLYAAEVAPAAWRGRCVCVYELMVVLGMLLGF 187          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: HXT11_YEAST (Hexose transporter HXT11 OS=Saccharomyces cerevisiae GN=HXT11 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 45/156 (28.85%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSP--------AQSGITNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V +   +   G ++FG   G  S          + G  ND G   LS     L  SI  IG  IG I+  K+ D  GRR  +     + ++G +I + S   W+   +GR++ G G+G ++ + P+ I+++ PK++RG    ++QLM  +G+ + Y
Sbjct:   61 VAILCLMIAFGGFIFGWDTGTISGFVNLSDFIRRFGQKNDKGTYYLSKVRMGLIVSIFNIGCAIGGIVLSKVGDIYGRRIGLITVTAIYVVGILIQITSINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKHIRGTLVQLYQLMGTMGIFLGY 216          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: HXT10_YEAST (Hexose transporter HXT10 OS=Saccharomyces cerevisiae GN=HXT10 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  158 TFVAVCGSYVFGSAI-GYSSPAQSGITNDLG---------------LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            T + +C    FG  I G+ +   SG  N                  LS     L   I  IG  +G +  G++ D  GR+  +    +V ++G VI + S   W+   +GR++ G G+G ++ + P  I++I+PK+LRG   + +QLMI +G+ + Y
Sbjct:   48 TVMGLCLMIAFGGFIFGWDTGTISGFINQTDFKRRFGELQRDGSFQLSDVRTGLIVGIFNIGCALGGLTLGRLGDIYGRKIGLMCVILVYVVGIVIQIASSDKWYQYFIGRIVSGMGVGGVAVLSPTLISEISPKHLRGTCVSFYQLMITLGIFLGY 204          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RGT2_YEAST3.412e-1133.12High-affinity glucose transporter RGT2 OS=Saccharo... [more]
MSSP2_ARATH3.412e-1136.46Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
GTR1_MOUSE3.412e-1134.62Solute carrier family 2, facilitated glucose trans... [more]
GTR1_HUMAN3.412e-1134.62Solute carrier family 2, facilitated glucose trans... [more]
KHT2_KLULA4.456e-1133.33Hexose transporter 2 OS=Kluyveromyces lactis GN=KH... [more]
HXT9_YEAST5.820e-1128.85Hexose transporter HXT9 OS=Saccharomyces cerevisia... [more]
INT2_ARATH7.601e-1128.38Probable inositol transporter 2 OS=Arabidopsis tha... [more]
GTR12_DANRE7.601e-1128.47Solute carrier family 2, facilitated glucose trans... [more]
HXT11_YEAST9.927e-1128.85Hexose transporter HXT11 OS=Saccharomyces cerevisi... [more]
HXT10_YEAST9.927e-1128.66Hexose transporter HXT10 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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