FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 48/147 (32.65%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++  TFVA    ++FG   GY S A   I  DL    L+  E  L  +  ++GA+I ++ +G  AD  GRR  + FS+++ +IG ++ + +   W +  GRL++G+G+G+ S + P++I++I PK +RG  T ++ L +  G  + Y
Sbjct:  109 IITLTFVASISGFMFGYDTGYISSALISINRDLDNKVLTYGEKELITAATSLGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAY 255          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPA----QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V L+ F A  G   FG A+GYSSPA    Q        L  A  S FG+++T+GA  G ++ G + D  GR+ ++    +  + G+ +I  ++  W L  GRLL G   G+ S V PVYI++I    +RG   +  QLM+ +G+ + YL
Sbjct:   26 VFLAAFAAALGPLSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYL 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.764e-18
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITND----LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V L+TF A  G   FG A+GYSSPA   +       L L     S FG+++T+GA  G ++ G + D  GR+ ++    +  + G+ +I  ++  W L  GRLL G   G+ S V PVYI++I    +RG   +  QLM+  G+ + Y+
Sbjct:   26 VFLATFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDTAASWFGAVVTLGAAAGGVLGGWLLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYV 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++  TFVA    ++FG   GY S A   I  DL    L+  E  +  +  ++GA+I +I +G  AD  GR+  +  S+++ +IG ++ V +   W + +GRL++G+G+G+ S + P++I++I PK +RG  T ++ L +  G  + Y
Sbjct:   86 IITLTFVASISGFMFGYDTGYISSALISIGTDLDHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVINSLWLTGGQLVAY 232          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITND----LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V L++F A  G   FG A+GYSSPA   +       L L     S FG+++T+GA  G I+ G + D  GR+ ++    +  + G+ +I  ++  W L  GRLL G   G+ S V PVYI++I    +RG   +  QLM+  G+ + Y+
Sbjct:   26 VFLASFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDNAASWFGAVVTLGAAAGGILGGWLLDRSGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYV 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG----LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V L+ F A  G   FG A+GYSSPA   +         L     S FG+I+T+GA  G ++ G + D  GR+ ++    +  + G+ +I  ++  W L  GRLL G   G+ S V PVYI++I    +RG   +  QLM+  G+ + YL
Sbjct:   26 VFLAAFAAALGPLSFGFALGYSSPAIPSLRRAAPPAPHLDEDAASWFGAIVTLGAAAGGVLGGWLLDRAGRKLSLVLCALPFVAGFAVITAAQNLWMLLGGRLLTGLACGIASLVAPVYISEIAYPEVRGLLGSCVQLMVVTGILLAYL 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.098e-17
Identity = 43/142 (30.28%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            F A  G  +FG   G  S A   I   LG   L+        S  ++GA++G I++G +AD+ GR+  +  + I+ I+G ++ V +   W + +GR ++G+G+G+ S ++P+Y+++I P  +RG    ++ L+I  G  + Y
Sbjct:   92 FAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAY 233          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 2
Query:  149 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG--LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            VLS    + G  +FG   G  S A + + +DLG  LS  +  L  S  +  A+I A  SG +AD++GR+  +  +D + +IG VI+  S+    + +GR +VGYG+GL S +VP+YI ++ P  LRG    ++ + I  G  + Y
Sbjct:   83 VLSAVAGISG-LLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAY 226          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.009e-16
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            VA  G+ +FG  +G  + A   +  DLG++   V +  +  S+L  GA +G+   G +AD  GR  T     I   IG  +   +++   + +GRLL G G+G+ S +VP+YI++I+P  +RG   +V+QL ICIG+
Sbjct:  111 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGI 246          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.848e-16
Identity = 55/146 (37.67%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  158 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF-----GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            T  A  G  +FG   G  S A   I +D    V + S F      S+  +GAMIGA   G I DY GR+    F+D+V   G +++  +   + L  GRLLVG G+G+ S   PVYIA+ +P  +RGG  + + LMI  G  ++YL
Sbjct:   35 TVTAGIGGLLFGYDTGVISGALLYIKDDF--EVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYL 178          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ITR2_YEAST1.689e-1832.65Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
GTR8_HUMAN2.206e-1835.57Solute carrier family 2, facilitated glucose trans... [more]
GTR8_RAT3.764e-1834.90Solute carrier family 2, facilitated glucose trans... [more]
ITR1_YEAST8.385e-1831.97Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
GTR8_MOUSE1.868e-1734.90Solute carrier family 2, facilitated glucose trans... [more]
GTR8_BOVIN3.186e-1734.90Solute carrier family 2, facilitated glucose trans... [more]
ITR1_SCHPO7.098e-1730.28Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
ITR2_SCHPO2.065e-1635.17Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
PLST4_ARATH6.009e-1635.04Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
INT1_ARATH7.848e-1637.67Probable inositol transporter 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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