FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLST3_ARATH (Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            VA   S +FG  +G  +     I+ DLG S   +AE  +  + L  GA IG++ SG +AD +GRR     S +  I+G  +   +++   + LGR LVG GMG+   V  +Y+ +++P  +RG + +  Q+  CIG+
Sbjct:   60 VASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLG-GAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGL 195          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 40/134 (29.85%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  179 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            S + G  IG  S A   I +DL LS  +  +   IL I +++G+  +G+ +D++GRR T+  +      G +++ F+    ++ +GR + G G+G    + PVY A++ P + RG  T+  ++ I IG+ + Y+
Sbjct:   37 SIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYV 170          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLST1_ARATH (Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGL---SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            VA   +++FG  IG  +     I  +LG    S+ E  L  SI   GA IG+I++G + D  G R T     I  I+G ++   + +   +  GR LVG G+G+ + +VP+YI+++ P   RG   T+ Q+  C+G+  + L
Sbjct:   85 VASMANFLFGYHIGVMNGPIVSIARELGFEGNSILE-GLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLL 225          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL------------------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +VL+ F AV GS  FG  IG  +  Q  I                      G     ++L  +I ++G MI + + G I+ ++GR+  M  ++++ ++G  ++  + A    +   LGR L+G   GL S +VP+Y+ +I P +LRG   T++QL I IG+
Sbjct:   24 LVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNATWLGRQGPGGPDSIPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLAVLGGALMGLANAVASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGI 184          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 40/145 (27.59%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            ++LS+ +A     + G  +G  S A   + + L L+  +  +  S L IGA++ +++ G + D  GRR T+ F+ I+ +   ++ V   +   L  GR+ +G  + L +    VYIA+++P++ RG   ++++LMI  G+ + Y+
Sbjct:   34 IILSSVIAAISGLLVGYELGIISGALLQLQSLLELTCQQQEIVVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVVSYGSLIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYI 178          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR12_MACFA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  152 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            LS+  A     + G  +G  S A   I   L LS  E  +  S L IGA++ ++  G + D  GRR  +  S  +  +G ++++ S +   L +GR+ +G  + L S    VYIA+I P++ RG   ++++LMI IG+   Y+
Sbjct:   46 LSSVTAAVSGLLVGYELGIISGALLQIKTLLTLSCHEQEMVVSSLLIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYI 188          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 41/140 (29.29%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            F+A     +FG  IG  + A   I ++  ++        S +  GA +GA+ SG ++  +GR+ ++    I+ + G +    +     L L R+L+G  +G+ SY  P+Y+++I P+ +RG   +++QLMI IG+   YL
Sbjct:   20 FLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYL 159          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 41/140 (29.29%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            F+A     +FG  IG  + A   I ++  ++        S +  GA +GA+ SG ++  +GR+ ++    I+ + G +    +     L L R+L+G  +G+ SY  P+Y+++I P+ +RG   +++QLMI IG+   YL
Sbjct:   20 FLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYL 159          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLST2_ARATH (Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            VA   S++FG  +G  +     I++DLG S   +AE  L  S+   GA +G++ SG +AD  GRR       +  I+G  +   S +   + LGR LVG GMGL   V  +Y+ +++P  +RG + +  Q+  C+G+
Sbjct:   57 VATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAE-GLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGL 192          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR3_BOVIN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE--------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++ +  VA  GS+ FG   G  +  ++ I + L  ++ E              +SL  +I ++G MIG+   G   +  GR  +M   +++ I G  ++ F K A  ++   LGRL++G   GL +  VP+YI +I+P  LRG F T++QL I IG+
Sbjct:   10 LIFAISVATIGSFQFGYNTGVINAPEAIIKDFLNYTLEERSEPPPSSVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRGNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGI 166          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PLST3_ARATH4.761e-1333.58Probable plastidic glucose transporter 3 OS=Arabid... [more]
PLT1_ARATH8.121e-1329.85Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLST1_ARATH8.121e-1332.39Probable plastidic glucose transporter 1 OS=Arabid... [more]
GTR4_MOUSE8.121e-1329.81Solute carrier family 2, facilitated glucose trans... [more]
GTR12_XENLA8.121e-1327.59Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MACFA8.121e-1331.47Solute carrier family 2, facilitated glucose trans... [more]
GALP_ECOLI8.121e-1329.29Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL68.121e-1329.29Galactose-proton symporter OS=Escherichia coli O6 ... [more]
PLST2_ARATH1.061e-1233.58Probable plastidic glucose transporter 2 OS=Arabid... [more]
GTR3_BOVIN1.385e-1231.21Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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