FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 40/143 (27.97%), Postives = 81/143 (56.64%), Query Frame = 2
Query:  152 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            +S   AV G  +FG  IG  + A   IT+   L+        S + +GA IGA+ +G ++  +GR+ ++    I+ ++G +   F+ +   L   R+++G  +G+ SY  P+Y++++  +N+RG   +++QLM+ +G+ + +L
Sbjct:   25 VSVAAAVAG-LLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 40/143 (27.97%), Postives = 81/143 (56.64%), Query Frame = 2
Query:  152 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            +S   AV G  +FG  IG  + A   IT+   L+        S + +GA IGA+ +G ++  +GR+ ++    I+ ++G +   F+ +   L   R+++G  +G+ SY  P+Y++++  +N+RG   +++QLM+ +G+ + +L
Sbjct:   25 VSVAAAVAG-LLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            VA   S +FG   G  S A   I  DL  +  +  +   IL + A++G++++G+ +D IGRR T+  + I+ ++G +++ +      L  GR   G G+G    V PVY A+I   + RG   ++  L I IG+ + Y+
Sbjct:   23 VASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMVAPVYSAEIATASHRGLLASLPHLCISIGILLGYI 161          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: HXT4_YEAST (Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae GN=HXT4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSP--AQSGITNDLG---------LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V +   +   G +VFG   G  S   AQ+      G         LS     L  SI  IG  IG I+  K+ D  GR+  +    ++ IIG +I + S   W+   +GR++ G G+G ++ + P+ I++++PK++RG   + +QLMI +G+ + Y
Sbjct:   71 VSICCLMVAFGGFVFGWDTGTISGFVAQTDFIRRFGMKHHDGTYYLSKVRTGLIVSIFNIGCAIGGIILAKLGDMYGRKMGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHIRGTLVSCYQLMITLGIFLGY 226          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR5_SHEEP (Solute carrier family 2, facilitated glucose transporter member 5 OS=Ovis aries GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL---GRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +S+  S+   G  +G++M G + + +GR+GT+ F++I  I+  +++ FS  A   ++    R+LVG   GL S VVP+Y+ ++ PKN RG    V QL I IG+
Sbjct:   71 WSVTVSMFPFGGFLGSLMVGPLVNNLGRKGTLLFNNIFSIVPALLMGFSDLAKSFEMIIVARVLVGICAGLSSNVVPMYLGELAPKNWRGALGVVPQLFITIGI 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 46/159 (28.93%), Postives = 74/159 (46.54%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSS--PAQSGITNDLGLSVAE-----------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            V +   +A  G  +FG  IG S    A      +   +V E                   LF S L + A++ + ++      +GRR TM F+ I  +IG  +   +     L +GRL +G+G+G  +  VP+++++I P  LRGG   V QLM+ IG+
Sbjct:   21 VFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGI 179          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 45/160 (28.12%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIG-------------------YSSPAQSGITNDL-GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            V+ +  VA  G  +FG  IG                   Y    +   TN          ++F S L + A+I ++++  +    GRR +M F  I+   G +I  F+K  W L +GR+L+G+G+G  +  VP+Y++++ P   RG      QL I IG+
Sbjct:   23 VLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGI 182          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 38/134 (28.36%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  179 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            S + G  IG  S A   I  DL ++  +  +    L I ++IG+  +G+ +D+IGRR T+  +  +   G +++  S    +L  GR + G G+G    + PVY A+++P + RG   +  ++ I  G+ + Y+
Sbjct:   47 SILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYV 180          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: MSSP1_ARATH (Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  152 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            L    A  G+++ G      + A   I  DL L  +   L  ++  IGA +    SG I+D++GRR  +  S ++  +  +I+++S   + L   RLL G+G GL   +VPVYI++  P  +RG   T+ Q +   G+ ++Y
Sbjct:    6 LVALAATIGNFLQGWDNATIAGAMVYINKDLNLPTSVQGLVVAMSLIGATVITTCSGPISDWLGRRPMLILSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVYISETAPPEIRGQLNTLPQFLGSGGMFLSY 147          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR5_HUMAN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Homo sapiens GN=SLC2A5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL---GRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +S+  S+   G  IG+++ G + +  GR+G + F++I  I+  +++  S+ A   +L    RLLVG   G+ S VVP+Y+ ++ PKNLRG    V QL I +G+
Sbjct:   71 WSVTVSMFPFGGFIGSLLVGPLVNKFGRKGALLFNNIFSIVPAILMGCSRVATSFELIIISRLLVGICAGVSSNVVPMYLGELAPKNLRGALGVVPQLFITVGI 174          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ARAE_ECOLI5.264e-1227.97Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO575.264e-1227.97Arabinose-proton symporter OS=Escherichia coli O15... [more]
PLT6_ARATH6.875e-1230.94Probable polyol transporter 6 OS=Arabidopsis thali... [more]
HXT4_YEAST6.875e-1230.13Low-affinity glucose transporter HXT4 OS=Saccharom... [more]
GTR5_SHEEP6.875e-1236.54Solute carrier family 2, facilitated glucose trans... [more]
STP6_ARATH8.979e-1228.93Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
STP1_ARATH1.173e-1128.13Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
PLT5_ARATH1.173e-1128.36Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
MSSP1_ARATH1.173e-1130.28Monosaccharide-sensing protein 1 OS=Arabidopsis th... [more]
GTR5_HUMAN1.173e-1135.58Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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