FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12478 contig Ccv1_Contig12478:26..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: HXT6_YEAST (High-affinity hexose transporter HXT6 OS=Saccharomyces cerevisiae GN=HXT6 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  248 LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            LS     L  SI  IG  IG I+  K+ D  GR+  +    ++ IIG +I + S   W+   +GR++ G G+G ++ + P+ I++++PK+LRG   + +QLMI  G+ + Y
Sbjct:  110 LSKVRTGLIVSIFNIGCAIGGIILSKLGDMYGRKVGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVSCYQLMITAGIFLGY 220          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR3_HUMAN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens GN=SLC2A3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 45/157 (28.66%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE--------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++ +  VA  GS+ FG   G  +  +  I   +  ++ +              +SL  +I ++G MIG+   G   +  GRR +M   +++ + G   +   K A  ++   LGRL++G   GL +  VP+YI +I+P  LRG F T++QL I +G+
Sbjct:   10 LIFAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGI 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_BOVIN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +SL  +I ++G MIG+   G   +  GRR +M   +++  +  V++ FSK       L LGR ++G   GL +  VP+Y+ +++P  LRG   T+HQL I +G+
Sbjct:   65 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTELRGALGTLHQLGIVVGI 168          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  266 SLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++F S L + A+I ++++  I    GR+ +M F  ++   G +I   +KA W L LGR+L+G+G+G  +  VP+Y++++ P   RG      QL I IG+
Sbjct:   85 TMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGI 184          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQ--------------SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++ +  VA  GS  FG   G  +  +              SG T    L  + +SL  +I ++G MIG+       +  GRR +M   +++   G  ++  SK   A   L +GR ++G   GL +  VP+YI++++P +LRG F T++QL I +G+
Sbjct:   11 LIYAVSVAAIGSLQFGYNTGVINAPEKIIQAFYNRTLSQRSGETISPELLTSLWSLSVAIFSVGGMIGSFSVSLFFNRFGRRNSMLLVNVLAFAGGALMALSKIAKAVEMLIIGRFIIGLFCGLCTGFVPMYISEVSPTSLRGAFGTLNQLGIVVGI 167          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_RAT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Rattus norvegicus GN=Slc2a1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGI--------TNDLGLSVAE------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++L+   AV GS  FG   G  +  Q  I         +  G S+        +SL  +I ++G MIG+   G   +  GRR +M   +++  +  V++ FSK       L LGR ++G   GL +  VP+Y+ +++P  LRG   T+HQL I +G+
Sbjct:   12 LMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRYGESIPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGI 168          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_PIG (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Sus scrofa GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +SL  +I ++G MIG+   G   +  GRR +M   +++  I  V++ FSK       L LGR ++G   GL +  VP+Y+ +++P  LRG   T+HQL I +G+
Sbjct:   24 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFISAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGI 127          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR14_HUMAN (Solute carrier family 2, facilitated glucose transporter member 14 OS=Homo sapiens GN=SLC2A14 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE--------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            ++ +  VA  GS+ FG   G  +  ++ I   +  ++ +              +SL  +I ++G MIG+   G   +  GRR +M   +++   G  ++   K A  ++   LGRL++G   GL +  VP+YI +I+P  LRG F T++QL I IG+
Sbjct:   34 LIFAITVATIGSFQFGYNTGVINAPETIIKEFINKTLTDKANAPPSEVLLTNLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAATGGCLMGLCKIAESVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGI 190          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR10_HUMAN (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 37/142 (26.06%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  152 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            L   V++ G   FG  +   S A   +  D GLS  E       L +GA++ +++ G + D  GR+  +  S++V + G + +  + +  WL LGR +VG+ + L S    +Y++++     RG   ++++  I +G+ ++Y
Sbjct:   10 LCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSY 151          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: YFIG_BACSU (Putative metabolite transport protein yfiG OS=Bacillus subtilis GN=yfiG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 2
Query:  158 TFVAVCGSYVFGSAIGYSSPAQS--GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            T V+  G  +FG   G  + A         L L+     L  S L +GA  GA+  G+++D  GRR T+ +  ++ I   +   FS  A  +   R L+G  +G  S  VP ++A+I+P   RG   T ++LMI IG  + Y
Sbjct:   25 TLVSTFGGLLFGYDTGVINGALPFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFGGRLSDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISPAERRGRIVTQNELMIVIGQLLAY 166          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
HXT6_YEAST2.000e-1134.23High-affinity hexose transporter HXT6 OS=Saccharom... [more]
GTR3_HUMAN2.000e-1128.66Solute carrier family 2, facilitated glucose trans... [more]
GTR1_BOVIN2.000e-1134.62Solute carrier family 2, facilitated glucose trans... [more]
STC_RICCO2.612e-1134.00Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
GTR3_CHICK2.612e-1129.30Solute carrier family 2, facilitated glucose trans... [more]
GTR1_RAT2.612e-1130.57Solute carrier family 2, facilitated glucose trans... [more]
GTR1_PIG2.612e-1135.58Solute carrier family 2, facilitated glucose trans... [more]
GTR14_HUMAN2.612e-1129.30Solute carrier family 2, facilitated glucose trans... [more]
GTR10_HUMAN2.612e-1126.06Solute carrier family 2, facilitated glucose trans... [more]
YFIG_BACSU3.412e-1131.69Putative metabolite transport protein yfiG OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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