FC920733

Overview
NameFC920733
Unique NameFC920733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.700e-59
Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 3
Query:  174 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY---RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT  ETTGGWP AP G YAWGYC++++   P+S+YC    RY PC     YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPS
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKE-RNPSSNYCAPSPRY-PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPS 167          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.700e-59
Identity = 110/194 (56.70%), Postives = 133/194 (68.56%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G     C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPS
Sbjct:   52 GKCQSQCPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPS 244          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.161e-58
Identity = 110/196 (56.12%), Postives = 135/196 (68.88%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G +   CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPS
Sbjct:   51 GNTNDYCGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNP-GDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPS 244          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.073e-57
Identity = 111/194 (57.22%), Postives = 134/194 (69.07%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPS
Sbjct:   43 GDTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPS 234          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.401e-57
Identity = 109/192 (56.77%), Postives = 130/192 (67.71%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVS-RPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            GG   + G     G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ETTGGWPDAP G YAWGYCY+++++ +P  D    Y  C    QY GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPS
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNY-QCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPS 253          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.389e-57
Identity = 109/194 (56.19%), Postives = 134/194 (69.07%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G + + CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPS
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPS 238          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.120e-57
Identity = 115/197 (58.38%), Postives = 136/197 (69.04%), Query Frame = 3
Query:   84 VLGGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGG--WPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            V G  +Q  GSG   G          G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTGG  W  AP G YAWGYCY R+++ P+S YC      PC    QY+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPS
Sbjct:   33 VPGCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPS 218          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.549e-56
Identity = 109/194 (56.19%), Postives = 132/194 (68.04%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPS
Sbjct:   43 GNTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPS 234          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.023e-56
Identity = 111/204 (54.41%), Postives = 137/204 (67.16%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHG--------TDG---GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCP-LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G +   CG G    +  +G G        T G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT  ETTGGW  AP G YAWGYCY+R+   P S YC +    P  PGQ YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPS
Sbjct:   48 GNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPS 250          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 116/230 (50.43%), Postives = 144/230 (62.61%), Query Frame = 3
Query:   57 LIFSLALSFVLGGSAQNCGS---------GVVCGE----------------RDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            L+FS+ L   L  SA+ CGS         G+ C +                +    G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPS
Sbjct:    7 LLFSVLL---LSASAEQCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQCPGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPG-DYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPS 232          
The following BLAST results are available for this feature:
BLAST of FC920733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_CARPA9.700e-5963.25Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI4_SOLTU9.700e-5956.70Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU2.161e-5856.12Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_SOLTU1.073e-5757.22Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI6_POPTR1.401e-5756.77Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIC_SOLLC2.389e-5756.19Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_GOSHI3.120e-5758.38Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI3_SOLTU1.549e-5656.19Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC2.023e-5654.41Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU2.642e-5650.43Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC32012D03EF RVDevelop1 Citrus clementina cDNA clone C32012D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920733 ID=FC920733; Name=FC920733; organism=Citrus clementina; type=EST; length=662bp
TAAAGGATAATTGTCATCATAACTCTTGCTTTCAAATGAGGCTCATTGGG
TCCTTACTAATTTTCTCTCTAGCCTTATCTTTTGTACTAGGAGGTTCAGC
ACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACG
GGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAA
GACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTA
CACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTA
ACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCC
CAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGA
ATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCG
ACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAATACTATGGC
CGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGA
AGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCACTGATC
CAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCA
CCAAAGCCATCG
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