FC920736

Overview
NameFC920736
Unique NameFC920736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920736_ssr9 microsatellite FC920736_ssr9:9..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12758 contig Ccv1_Contig12758:136..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 48/138 (34.78%), Postives = 65/138 (47.10%), Query Frame = 3
Query:  306 PEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKK-------FSMEPSSGPSFGFAGVKAKEGP----KRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            P  P LC N CGFFGS + MN+CSKC++++   ++Q  +A                K P  + I   Q  P+EIK         + EPSS P            P     RC +C  +VG+ GF C+CG+ FC  HRY
Sbjct:   13 PTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVA--------KAAVKNSLKLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRY 142          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 3
Query:  267 EKMESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQL--AAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            E+ +S   T  QA E P LCV  CGFFGS + M++CSKC++ +   + Q  +  AA                EP  A +V+ +     +   S EPSS                RC  C  +VG+ GF C+CG+ FC  HRY
Sbjct:    4 EQNDSTSFTQSQASE-PKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEP-PAVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFCGEHRY 143          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 46/140 (32.86%), Postives = 58/140 (41.43%), Query Frame = 3
Query:  267 EKMESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            E+ E+       A E   LC + CGFFGS  T NMCSKC++          L A                  I   I      P    K   E ++  +   A   AK  P RC  C+ +VGL GF CRCG  FC+ HR+
Sbjct:   62 EEEEASTAAAAAADEQLALCSSGCGFFGSKETNNMCSKCYRD--------HLKATSPLFSSSSSPATASTTDITVPIAPATTAPTPSLKGKEEEATAAASSSAAAAAK--PNRCVACRKKVGLLGFECRCGGTFCSTHRH 191          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/138 (34.06%), Postives = 58/138 (42.03%), Query Frame = 3
Query:  273 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            ME   E   + P  P+ C N CGFFGSA T  +CSKC++  +++Q  A  AA                 P+  G +               P   P     G K K    RC  C   VGL GF CRCG +FC  HRY
Sbjct:    1 MEQGSERQDERP--PLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPSAAAQSAEHDQVVLPAPEGVPVDEGAM---------------PPPPPRH---GAKTK---SRCAACGRSVGLMGFECRCGAVFCGAHRY 115          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP11_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica GN=SAP11 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 43/134 (32.09%), Postives = 58/134 (43.28%), Query Frame = 3
Query:  285 DETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            + T  +APE   LC N+CGF G+ AT N+C  C  A   +   +  AA                   +       V  V  +     P++GP    +         RC +C+ RVGLTGF CRCG L+C  HRY
Sbjct:   10 EPTELRAPE-MTLCANSCGFPGNPATNNLCQNCFLAASASSSSSSAAASPSTTSLPVFPVVEKPRQAVQSSAAAAVALVVER-----PTAGPVESSSKASRSSSVNRCHSCRRRVGLTGFRCRCGELYCGAHRY 137          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 3
Query:  300 QAPEG-PILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGIVDLQVGPVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            QA  G P+LC + CGF+G+ AT++MCS C++   L    A +A                   + +    +    V    FS + +  P+     V+ K    RC +CK +VGL GF CRCG  +C  HRY
Sbjct:  196 QASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCL-LNGATMATGPSSSVAAASAATVATGAVTSDSCSVPSAEVNGAAFSSKNNPEPA---TVVEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRY 321          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  276 ESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPI--IAGIVDLQVG-PVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            +  + T  +APE   LC N+CGF G+ AT N+C  C  A   +       +               K+P    A +V+ Q   P  +++ +   ++ P    A V       RC+ C+ RVGLTGF CRCG+LFC  HRY
Sbjct:    7 KDQEPTELRAPE-ITLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVLD----------KQPPRPAAPLVEPQAPLPPPVEEMASALATAP----APVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRY 131          
BLAST of FC920736 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  276 ESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPI--IAGIVDLQVG-PVEIKKFSMEPSSGPSFGFAGVKAKEGPKRCTTCK*RVGLTGFNCRCGNLFCAVHRY 686
            +  + T  +APE   LC N+CGF G+ AT N+C  C  A   +       +               K+P    A +V+ Q   P  +++ +   ++ P    A V       RC+ C+ RVGLTGF CRCG+LFC  HRY
Sbjct:    7 KDQEPTELRAPE-ITLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVLD----------KQPPRPAAPLVEPQAPLPPPVEEMASALATAP----APVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRY 131          
The following BLAST results are available for this feature:
BLAST of FC920736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SAP7_ARATH1.207e-1434.78Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ARATH1.334e-1333.80Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP12_ORYSJ1.334e-1332.86Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ORYSJ3.882e-1334.06Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP11_ORYSJ3.882e-1332.09Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP3_ORYSJ4.292e-1232.31Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ9.562e-1232.86Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSI9.562e-1232.86Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC32012D08EF RVDevelop1 Citrus clementina cDNA clone C32012D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920736 ID=FC920736; Name=FC920736; organism=Citrus clementina; type=EST; length=688bp
ACGCCCCGTCTCTCTCTCTCTCTCTCTCTGTCTCTTTTCTTTTTTATTTT
TGCTTGCCCTCACTTTTTTTTTTCTTTTTCAATATTATTACCTACGATTA
TCTCTTCGATTGAAGGCAAGCTTTCACGTCCATAAAACGACGTCGATTAG
TTTCAGTCTTGTCGGTTGATCAAAACCTTGATTTTTGAAACTGATTTTTG
GGGAATTTTTTTTTACAGATTAATTCGGTTCGATTTTGTAAATCAAGATC
GGACGAATAGGAGGTAGAAAAGATGGAATCACATGATGAAACTGGATGCC
AAGCTCCAGAAGGCCCCATTCTTTGCGTCAACAATTGTGGCTTCTTCGGA
AGTGCTGCTACCATGAATATGTGTTCCAAGTGCCACAAGGCCATGATCCT
TAATCAGGAACAGGCCCAACTAGCAGCTTCATCTATTGGGAGCATTGTGC
ATGGCAGCTCCGGTGGGACTGGCAAGGAGCCCATCATTGCTGGCATCGTG
GATCTACAAGTGGGACCAGTTGAGATAAAGAAATTCTCCATGGAACCATC
TAGTGGTCCTTCCTTTGGCTTCGCAGGAGTGAAAGCAAAGGAAGGCCCTA
AAAGGTGTACAACTTGCAAATAACGTGTCGGTTTGACAGGGTTCAATTGC
AGATGTGGGAACCTCTTCTGTGCAGTTCACCGATACTC
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