FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:485..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 371.318 bits (952), Expect = 2.882e-102
Identity = 178/226 (78.76%), Postives = 211/226 (93.36%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILSFVDK+ LEPGC++L+H+K +S+VG+LQD+ DPMVSVMK++K+P ESY+DIGGL++QIQEIKE+VELPLTHPELYE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLR+VGSELIQKYLGDGP+L R++F+VA + +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFD RGDV+VI+ TN+IE+LDPAL+RPGRIDRKI F  P
Sbjct:  128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.581e-100
Identity = 180/227 (79.30%), Postives = 206/227 (90.75%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV I+SFVDKD LEPGC++L+H+K +S+VGLL D+ DPM++VMK++KAP ESYADIGGL++QIQEIKEAVELPLTHPELYE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGP+LVR+LF  A++ SPSIVFIDEIDA+GTKRYDA SG EREIQRTMLELLNQLDGFD S+ D++VI+ TNRI  LDPAL+RPGRIDRKI F  P
Sbjct:  137 YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENP 363          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.219e-97
Identity = 173/226 (76.55%), Postives = 205/226 (90.71%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV I+SFVDKD LEPGC +L++ K  SVVG+L+ E+DPMV+VMK+EKAP E+YADIGGL+ QIQEIKE+VELPLT+PELY+++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVG+ELIQ+YLG+GPKLVRELFRVAD  +PSI+FIDEIDA+G KRY+  SGG RE+QRTMLELLNQLDGFD+R D++VI+ TN+IE+LDPAL+RPGRIDRKI+F  P
Sbjct:  115 YYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMP 340          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.209e-77
Identity = 133/226 (58.85%), Postives = 184/226 (81.42%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV +LS +D++ L+PGC++ +H    ++V +L  E D  + +++ ++ P  SY DIGGLD Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA +T+A+F+RVVGSE +QKYLG+GP++VR++FR+A + SPSI+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  107 YYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLP 332          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.299e-75
Identity = 130/226 (57.52%), Postives = 181/226 (80.09%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS +D++ L+P  ++ +H    ++V +L  E D  +S+++ ++ P   Y+DIGG+D Q QEI+EAVELPLTH ELY  IGI+PP+GV++YG PG GKT+LA AVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  108 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 333          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.542e-74
Identity = 130/226 (57.52%), Postives = 179/226 (79.20%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS ++++ L+P  ++ +H    ++V +L  E D  +S++   + P  SY DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  101 YYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 326          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 129/226 (57.08%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  111 YYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 336          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 129/226 (57.08%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  111 YYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 336          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 129/226 (57.08%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  111 YYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 336          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 129/226 (57.08%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  111 YYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 336          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS4_YEAST2.882e-10278.7626S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_SCHPO1.581e-10079.3026S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS4_ENCCU6.219e-9776.5526S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS6B_CAEEL3.209e-7758.85Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_MANSE2.299e-7557.5226S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_ARATH2.542e-7457.5226S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_RAT3.320e-7457.0826S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA3.320e-7457.0826S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN3.320e-7457.0826S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN3.320e-7457.0826S protease regulatory subunit 6B OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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