FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 118/226 (52.21%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD+ G V++I+ TNR + LDPALLRPGR+DRKI+   P
Sbjct:   85 YVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 108/194 (55.67%), Postives = 155/194 (79.90%), Query Frame = 2
Query:   98 LQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            L  ++D  V++M+VE+ P  +Y D+GG   QI++++E VE+PL HPE + ++GI PPKGV++YG PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VR+LF++A      I+F DE+DA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPALLRPGR+DRK++F  P
Sbjct:  148 LPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 341          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 113/218 (51.83%), Postives = 164/218 (75.23%), Query Frame = 2
Query:   35 DQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            D LE G  + + N   SV  +L DE D     M+V+++P  +YADIGGLD Q++E++EAVE PL +PE ++ +G++PP GV+L+G PGTGKT+LAKAVAN T A+F+++ GSEL++K++G+G +LVR+LF +A+   P+I+FIDEIDAV  KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I  TNR + LD A+LRPGR DR I+   P  D
Sbjct:  110 DTLEVGDRVAI-NDSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPD 326          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 118/226 (52.21%), Postives = 165/226 (73.01%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G V++I+ TNR + LDPALLRPGR+DRKI+   P
Sbjct:   85 YVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 111/225 (49.33%), Postives = 164/225 (72.89%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            ++ ++  V+ ++L PG  I ++     ++  L  E D  V  M+V++ P E Y+DIGGL  QI+E+ EA+ LP+   + +  +G+KPPKG +++G PGTGKTLLA+A A  ++ATFL++   +L+Q ++GDG KLVR+ F +A + SP+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   V+VI  TNR+++LDPALLR GR+DRK++F  P
Sbjct:  132 FLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLP 356          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 116/226 (51.33%), Postives = 163/226 (72.12%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG    ++K++L+ G  + +    L+++  L  EVDP+V  M  E     SY+D+GGL  QI+E++E VELPL +PEL++ +GI PPKG +L+G PGTGKTLLA+AVA+     FL+VV S ++ KY+G+  +++RE+F  A D  P IVF+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G V+VI+ TNR ++LDPALLRPGR+DRKI+   P
Sbjct:   96 YVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLP 321          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.916e-62
Identity = 115/226 (50.88%), Postives = 162/226 (71.68%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+     FL+VV S ++ KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   V++I+ TNR ++LDPALLRPGR+DRKI    P
Sbjct:   79 YVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLP 304          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.916e-62
Identity = 115/226 (50.88%), Postives = 162/226 (71.68%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+     FL+VV S ++ KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   V++I+ TNR ++LDPALLRPGR+DRKI    P
Sbjct:   79 YVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLP 304          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.916e-62
Identity = 115/226 (50.88%), Postives = 162/226 (71.68%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+     FL+VV S ++ KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   V++I+ TNR ++LDPALLRPGR+DRKI    P
Sbjct:   79 YVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLP 304          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.916e-62
Identity = 115/226 (50.88%), Postives = 162/226 (71.68%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+     FL+VV S ++ KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   V++I+ TNR ++LDPALLRPGR+DRKI    P
Sbjct:   79 YVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLP 304          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PS10A_ARATH5.875e-6352.2126S protease regulatory subunit 10B homolog A OS=A... [more]
PRS7_DICDI5.875e-6355.6726S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR1_HALSA7.673e-6351.83Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PS10B_ARATH7.673e-6352.2126S protease regulatory subunit S10B homolog B OS=... [more]
PRS6A_SCHPO7.673e-6349.3326S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS10_CAEEL1.709e-6251.33Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SPETR2.916e-6250.8826S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.916e-6250.8826S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.916e-6250.8826S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN2.916e-6250.8826S protease regulatory subunit S10B OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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