FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:485..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.795e-73
Identity = 127/223 (56.95%), Postives = 178/223 (79.82%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            Y V ILS +D++ L+P  ++ +     ++V +L  E D  +S+++ ++ P  SYAD+GGLD Q QE++EAVELPLT  +LY  IGI PP+GV+LYG PGTGKT+L KAVANST+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR ++ELL Q+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F
Sbjct:   80 YVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEF 302          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.262e-73
Identity = 128/223 (57.40%), Postives = 180/223 (80.72%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            Y V ILS +D+++L+P  ++ +H    ++V +L  E D  ++++   + P  +YAD+GGLD Q QEI+EAVELPLT  +LY+ IGI PP+GV+LYG PGTGKT+L KAVANST+A+F+RV GSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGF+   +V+VI+ TNR ++LDPALLRPGR+DRKI+F
Sbjct:  112 YVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEF 334          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.179e-73
Identity = 126/226 (55.75%), Postives = 179/226 (79.20%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ++S +D++ L+P  ++ +H    ++V +L    D  + ++  ++ P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  111 YYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 336          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.068e-72
Identity = 128/226 (56.64%), Postives = 173/226 (76.55%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V ILS VD++ L+P   + +H    ++VG+L  EVD  + VM   + P  +Y D+GGLD Q QEIKE VELPL   +LY  IGI PP+GV+LYG PGTGKT+L KAVAN T ATF+RV GSE +QKYLG+GP++VR++FR+A + +PSIVFIDE+D++ TKR+DA +  +RE+QR ++ELLNQ+DGFD   +V+VI+ TNR +++DPALLRPGR+DRKI+F  P
Sbjct:   80 FVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.822e-72
Identity = 128/226 (56.64%), Postives = 178/226 (78.76%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V    ++++++L+PG  + ++ + L++V +L    DPMV   +VE+ P  SY DIGGLD QI+EI+EAVELPL  PEL+ ++GI+PPKGV+LYG PGTGKTLLAKAVAN T ATF+RVVGSE +QKY+G+G +LVRE+F++A + +PSI+FIDE+DA+  +R ++ + G+RE+QRTM++LL +LDGFD RGDV+VI  TNRI+ LDPA+LRPGR DR I+   P
Sbjct:   87 FVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLP 312          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.108e-72
Identity = 130/224 (58.04%), Postives = 177/224 (79.02%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V ILS +D++ L+P  ++ +     ++V  L  E D  + ++  ++ P ESY+DIGG D Q QE++EAVELPLTH  LY+ IGI PP+GV+LYG PGTGKT+LAKAVA+ TSA F+RVVGSE +QKYLG+GP+LVR++FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR ++ELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:   98 VRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLP 321          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.301e-72
Identity = 127/226 (56.19%), Postives = 178/226 (78.76%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYV ILS ++++ L+P  ++ +     ++V +L  E D  +S++   + P  +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F  P
Sbjct:  106 YYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 331          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.631e-71
Identity = 126/223 (56.50%), Postives = 174/223 (78.03%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            Y V ILS +D++ L+P  ++ +H    ++V +L  + D  +SVM   + P  +YAD+GGLD Q QEI+EAVELPL   +LYE IGI PP+GV+LYG PGTGKT+L KAVANST A F+RV GSE + KYLG+GP++VR++FR+A + +PSI+FIDE+D++ TKR+DA +G +RE+QR ++ELL Q+DGFD   +V+VI+ TNR ++LDPALLRPGR+DRKI+F
Sbjct:  118 YVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 340          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.306e-70
Identity = 124/226 (54.87%), Postives = 175/226 (77.43%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I  ++++D+L+PG  + +  + +++V LL  E DP V   +V + P  +Y DIGGL+ Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKAVAN  +ATF+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+V+VI  TNR + LDPALLRPGR DR I+   P
Sbjct:   84 FVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 309          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.909e-70
Identity = 129/227 (56.83%), Postives = 175/227 (77.09%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y V I   ++   L PG  + + N   ++  +L +++DP+VS+MKVEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL+E +GI  PKGVI+YG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G K+VRELF +A + +PSI+F+DEID++G+ R +    GG+ E+QRTMLELLNQLDGF+S  ++++I+ TNRI+ LDPALLRPGRIDRKI+F  P
Sbjct:  102 YIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNP 328          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS6B_SCHPO4.795e-7356.9526S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_ASPNG6.262e-7357.4026S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_MOUSE8.179e-7355.7526S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ENCCU1.068e-7256.6426S protease regulatory subunit 6B homolog OS=Ence... [more]
PSMR_ARCFU1.822e-7256.64Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS6B_DICDI3.108e-7258.0426S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_SOLTU5.301e-7256.1926S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_YEAST2.631e-7156.5026S protease regulatory subunit 6B homolog OS=Sacc... [more]
PSMR_PYRKO1.306e-7054.87Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS8_NAEFO2.909e-7056.8326S protease regulatory subunit 8 homolog OS=Naegl... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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