FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.501e-26
Identity = 74/188 (39.36%), Postives = 108/188 (57.45%), Query Frame = 2
Query:  161 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD---------VQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD*ET 697
            + DI GL      +KEAV  P   P+L++ +  +P +G++L+G PGTGKT++AKAVA  +++TF  V  S L+ KYLG+  KLVR LF +A  LSPSI+FIDEID++ T R D  +   R I+  +L   + L    ++ +         V V+  TN   ++D A  R  R  RK+    P+ D ET
Sbjct:  470 WEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLR-EPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKL--YIPLPDYET 652          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 62/178 (34.83%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  131 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            +K+ K     + DIG L      + E +E P  +  ++ +  ++   G++LYG PG GKTLLA AVA      F+ V G E++ K++G   + +RELF  A  + P I+F DE D++  KR    +G      R + +LL Q+DG +    V ++  T+R + +D ALLRPGR+D+ +
Sbjct:  686 VKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSV 860          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 65/170 (38.24%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FDSRGDVQVILGTNRIESLDPALLR 640
            ++  P  ++ DI G++     IKE V  P+  P+++  +   PPKG++L+G PGTGKTL+ K +A+ + ATF  +  S L  K++G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG    S   + V+  TNR + +D A  R
Sbjct:  392 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 557          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 64/180 (35.56%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  134 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS---PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            K+++AP      +  +D     +KE + +PL +PE    +G+  PKGV+L G PG GKTLL KAVA    A  + + G  +     G+  + +R++F  A + +   P+++FIDE+DA+  KR  ++S  E    R + +LL  +DG DS   +  +  T+R +++DPAL RPGR DR++
Sbjct:  184 KLQEAP---QLKVAAMDDTCASLKEIIHMPLHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPE---NRVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREV 357          

HSP 2 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  125 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 439
            S+ +VE  P+  +  IGGL+    ++++++E P+ +PE +  +G+ PPKGV+LYG PG  KT L KAVA S   +F  +  ++L   Y+GD  K + ++     D
Sbjct:  445 SIGRVEFKPVH-WEHIGGLEDIKHKLRQSIEWPMKYPEAFSRMGLTPPKGVLLYGPPGCAKTTLVKAVATSCHCSFFSISAADLFSPYVGDSEKTLAQVSNRCSD 548          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREI-QRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            V++ P   +ADI GL    + ++EAV LPL  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  + L  KY G+  KLVR LF +A   +PS +FIDEID++ +KR    +G E E  +R   ELL Q+DG        +S   V V+  TN    +D AL R  R++++I    P  D
Sbjct:  225 VQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKR---GTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEID 410          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  170 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS---PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            +GGL      ++E + LPL +P     +G++ P+GV+L G PG GKT L +AVA  T A  L V    L     G+  + VR +F+ A +L+   P+++F+DE+DA+  +R   H   E    R + ++L  LDG     +V V+  TNR ++LDPAL RPGR DR++
Sbjct:  202 LGGLSEAADSLRELLRLPLRYPRALASLGLEVPRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDALCPRRGGPHQAPE---SRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREV 366          

HSP 2 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 77/230 (33.48%), Postives = 120/230 (52.17%), Query Frame = 2
Query:  104 DEVDPMVSVMKVEKAPLES-----------YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ-RTMLELLNQLDG-----FDSRG--------------------------DVQVILGTNRIESLDPALLRPGRIDRKI 664
            DE D + +  K++ +   S           +  IGGL+    ++K+++E PL  P  +  +G+  PKGV+LYG PG  KT L +A+A S   +F+ V G++L   ++GD  K++ ++FR A   +P+IVF+DEID++   R  + S  E  +Q R +  LLN+LDG      + RG                          +V V+  TNR + LD ALLRPGR+D+ I
Sbjct:  435 DETDFLEAFKKIQPSSFRSVIGVTDIKPVGWEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRCSFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSILGSR--SISRTECNVQDRVLSVLLNELDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVVAATNRPDVLDDALLRPGRLDKII 662          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FDSRGDVQVILGTNRIESLDPALLR 640
            ++  P   + DI G++     IKE V  P+  P+++  +   PPKG++L+G PGTGKTL+ K +A+ + ATF  +  S L  K++G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG    S   + V+  TNR + +D A  R
Sbjct:  395 MDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 560          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FDSRGDVQVILGTNRIESLDPALLR 640
            ++  P   + DI G++     IKE V  P+  P+++  +   PPKG++L+G PGTGKTL+ K +A+ + ATF  +  S L  K++G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG    S   + V+  TNR + +D A  R
Sbjct:  401 MDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 566          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 65/170 (38.24%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD--VQVILGTNRIESLDPALLR 640
            ++  P  ++ DI GL+     IKE V  P+  P+++  +   PPKG++L+G PGTGKTL+ K +A  + ATF  +  S L  K++G+G K+VR LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG  +  D  + V+  TNR + +D A  R
Sbjct:  374 MDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARR 539          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            V   P   + D+ GL    + +KEAV  P+  P+++     KP KG++LYG PGTGK+ LAKAVA   S+TF  +  S+++ K+LGD  KLV++LF +A + + S++FIDE+D++ + R D  S   R I+   L  +N + G DS G + V+  TN    LD A+ R  R +++I
Sbjct:  126 VTTKPNVKWDDVAGLYQAKEYLKEAVIFPIKFPQMFTG-NRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIKTEFLIQMNGV-GNDSDG-ILVLAATNIPWGLDLAIRR--RFEKRI 296          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBP6_YEAST7.501e-2639.36Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
PEX1_YEAST9.796e-2634.83Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
FIGL1_HUMAN1.671e-2538.24Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SPA5L_XENTR2.182e-2535.56Spermatogenesis-associated protein 5-like protein ... [more]
KTNA1_STRPU2.182e-2541.15Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
SPA5L_BOVIN2.850e-2538.10Spermatogenesis-associated protein 5-like protein ... [more]
FIGL1_RAT2.850e-2538.24Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_MOUSE3.723e-2538.24Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_XENTR4.862e-2538.24Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
VPS4_DICDI6.350e-2539.20Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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