FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VQVILGTNRIESLDPALLR--PGRI 652
            D+ G  +    ++EAV LP  +P L++ +  +P KG++L+G PG GKTLLAKAVA  +   F  +  S L  K++GD  K +R LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI  TNR   LD A+LR  P RI
Sbjct:  240 DVAGCHSAKAALEEAVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRI 401          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            ++ DI GL++      EA+ +PL  P+L+  +   PP+GV+L+G PGTGKTL+AK++A+   A F  +  S L  K++GD  KLV+ LF VA    P+I+FIDE+D++ +KR    S  E E   R   E L  LDG  S  +++V++   TNR + LD A+ R
Sbjct:  248 AWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR----SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR 406          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 78/182 (42.86%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG----FDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            S  DI G+    Q + EAV LPL  PE ++  G++ P K ++L G PGTGKTL+A+A+A+ +S+TF  V  ++L  K+ GD  K+VR LF +A   +PSI+FIDEID +G +R   +SG     +R   E L Q+DG    FDSR  V V+  TN    LD AL R  R +++I    P  D
Sbjct:  191 SLDDIIGMHDVKQVLHEAVTLPLLVPEFFQ--GLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQR--GNSGEHEASRRVKSEFLVQMDGSQNKFDSR-RVFVLAATNIPWELDEALRR--RFEKRIFIPLPDID 365          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FDSRGDVQVILGTNRIESLDPALLR 640
            ++  P  ++ DI GL+     IKE V  P+  P+++  +   PPKG++L+G PGTGKTL+ K +A  + ATF  +  S L  K++G+G K+VR LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG    S   + V+  TNR + +D A  R
Sbjct:  373 MDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 538          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 71/169 (42.01%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  164 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDG-FDSRGDVQVILG-TNRIESLDPALLR--PGRI 652
            +DI G +   + ++E V LP  +P L+  +  +P +G++L+G PG GKTLLA+AVA    +T FL V  + L  K++GD  K+VR LF++A +  P+I+FIDEID++  +R +     E E+ R M  E L Q+DG   S+ D  +++G TNR E LD A+LR  P RI
Sbjct:  178 SDIIGAETAKRALEETVILPTVNPSLFSGLR-QPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEK----ETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRI 341          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VQVILGTNRIESLDPALLR--PGRI 652
            D+ G  +    ++EAV LP  +P L+  +  +P KG++L+G PG GKTLLAKAVA  +   F  +  S L  K++GD  K +R LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI  TNR   LD A+LR  P RI
Sbjct:  270 DVAGCHSAKATLEEAVILPALNPNLFSGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRI 431          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  161 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 538
            ++DI GLD     +KEAV  P   PEL++ +  +P +G++L+G PGTGKT+LA+AVA    ATF  +  S L  KYLGD  KLVR LF VA   + S++F+DEID++ + R D  SG E E  R +
Sbjct:  378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARND--SGNEHESSRRL 500          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 65/180 (36.11%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVAD--------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLDA+ Q+I + A    +  PEL E +  K  KG++LYG PGTGKTL+A+ ++   +    ++V G E++ KY+G   + +R LF+ A+        D    ++  DE+D+V  +R    S G       + +LL+++DG D   ++ VI  TNR++ +D ALLRPGR + +I+   P
Sbjct:  277 IGGLDAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLP 456          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 67/176 (38.07%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAV-GTKRYDAHSGGEREIQRTMLELLNQL------------DGFDSRGD-----VQVILGTNRIESLDPALLR 640
            DI GL++    +KEAV  P   P+L+  +  +P +G++L+G PGTGKT+LA+AVA  + +TF  +  S L  KYLG+  KLVR LF +A  LSPSI+F+DEID++ G++  +  +   R I+   L   + L            +  D+ GD     V V+  TN   S+D A  R
Sbjct:  606 DIAGLESAKYSLKEAVVYPFLRPDLFRGLR-EPVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARR 780          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 74/188 (39.36%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + + P   + DI  L+   + +KEAV LP+  PE ++ I  +P KGV++ G PGTGKTLLAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG     D       V V+  TN    +D AL R  R++++I    P
Sbjct:  195 ISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRR--GTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 377          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
SPAST_CAEEL6.350e-2542.51Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
FIGL1_DROME6.350e-2540.85Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
MEI1_CAEEL1.083e-2442.86Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
FIGL1_XENLA1.415e-2438.24Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
SPAST_BRUMA4.116e-2442.01Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
SPAST_CAEBR5.375e-2442.51Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SUR2_SCHPO7.021e-2446.83Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
SEC18_CANAL7.021e-2436.11Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
SAP1_YEAST7.021e-2438.07Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
KTNA1_SALSA7.021e-2439.36Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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