FC920739
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24 Identity = 73/187 (39.04%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD------VQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679 + + P ++ DI L+ + +KEAV LP+ PE ++ I +P KGV++ G PGTGKTLLAKAVA TF V S L KY G+ KLVR LF +A +P+ +FIDEID++ ++R S +R ELL Q+DG + V V+ TN +D AL R R++++I P Sbjct: 195 ISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 376
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24 Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640 +++DI GLD I ++K+ V LP+ L+E+ + +PPKGV+LYG PG GKTL+AKA A F+ + S L K+ G+ KL +F +A L PSI+FIDEID+ R S + E M + ++ DG D+ QVI+ TNR + LD A++R Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24 Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640 +++DI GLD I ++K+ V LP+ L+E+ + +PPKGV+LYG PG GKTL+AKA A F+ + S L K+ G+ KL +F +A L PSI+FIDEID+ R S + E M + ++ DG D+ QVI+ TNR + LD A++R Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24 Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640 +++DI GLD I ++K+ V LP+ L+E+ + +PPKGV+LYG PG GKTL+AKA A F+ + S L K+ G+ KL +F +A L PSI+FIDEID+ R S + E M + ++ DG D+ QVI+ TNR + LD A++R Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24 Identity = 68/165 (41.21%), Postives = 95/165 (57.58%), Query Frame = 2 Query: 158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640 ++ DI GLD I E+K+ V LP+ L+E + +PPKGV+LYG PG GKTL+AKA A F+ + S L K+ G+ KL +F +A L PSI+FIDEID+ R S + E M + ++ DG D+ + QVI+ TNR + LD A+LR Sbjct: 93 TWHDIAGLDEVITELKDTVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILR 253
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 2 Query: 137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD*ET 697 ++ P + D+ GL + ++EAV LPL PE ++ I +P KGV+++G PGTGKTLLAKAVA TF V + L K+ G+ ++VR LF +A +PS +FIDEID++ R SG +R ELL Q+DG SR V V+ TN +D AL R R++++I P+ D E+ Sbjct: 230 LDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRI--YIPLPDFES 417
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679 V + P ++D+ GL+ + +KEAV LP+ P L+ G + P +G++L+G PGTGK+ LAKAVA + ++TF + S+L+ K+LG+ KLV+ LF++A + PSI+FIDEID++ R + S R I+ E L Q+ G D ++LG I LD A+ R R +++I P Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679 V + P ++D+ GL+ + +KEAV LP+ P L+ G + P +G++L+G PGTGK+ LAKAVA + ++TF + S+L+ K+LG+ KLV+ LF++A + PSI+FIDEID++ R + S R I+ E L Q+ G D ++LG I LD A+ R R +++I P Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679 V + P ++D+ GL+ + +KEAV LP+ P L+ G + P +G++L+G PGTGK+ LAKAVA + ++TF + S+L+ K+LG+ KLV+ LF++A + PSI+FIDEID++ R + S R I+ E L Q+ G D ++LG I LD A+ R R +++I P Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23 Identity = 62/153 (40.52%), Postives = 93/153 (60.78%), Query Frame = 2 Query: 224 LTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679 L +P+L+ G PK V+ YG PGTGKTL+A+A+A T+++F+ V ELI +++GD K++REL++ A + +P IVFIDE+DA+G R Y + G ++ + LL +LDG V I TN LDPA+ R + +I+F P Sbjct: 143 LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRG---DVSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLP 287 The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bpback to top |