FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 73/187 (39.04%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD------VQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + + P  ++ DI  L+   + +KEAV LP+  PE ++ I  +P KGV++ G PGTGKTLLAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG     +      V V+  TN    +D AL R  R++++I    P
Sbjct:  195 ISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 376          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            +++DI GLD  I ++K+ V LP+    L+E+  + +PPKGV+LYG PG GKTL+AKA A      F+ +  S L  K+ G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    QVI+   TNR + LD A++R
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            +++DI GLD  I ++K+ V LP+    L+E+  + +PPKGV+LYG PG GKTL+AKA A      F+ +  S L  K+ G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    QVI+   TNR + LD A++R
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            +++DI GLD  I ++K+ V LP+    L+E+  + +PPKGV+LYG PG GKTL+AKA A      F+ +  S L  K+ G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    QVI+   TNR + LD A++R
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 68/165 (41.21%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  158 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            ++ DI GLD  I E+K+ V LP+    L+E   + +PPKGV+LYG PG GKTL+AKA A      F+ +  S L  K+ G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+  + QVI+   TNR + LD A+LR
Sbjct:   93 TWHDIAGLDEVITELKDTVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILR 253          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD*ET 697
            ++  P   + D+ GL    + ++EAV LPL  PE ++ I  +P KGV+++G PGTGKTLLAKAVA     TF  V  + L  K+ G+  ++VR LF +A   +PS +FIDEID++   R    SG     +R   ELL Q+DG          SR  V V+  TN    +D AL R  R++++I    P+ D E+
Sbjct:  230 LDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRI--YIPLPDFES 417          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679
            V + P   ++D+ GL+   + +KEAV LP+  P L+   G + P +G++L+G PGTGK+ LAKAVA  + ++TF  +  S+L+ K+LG+  KLV+ LF++A +  PSI+FIDEID++   R +  S   R I+    E L Q+ G     D  ++LG   I   LD A+ R  R +++I    P
Sbjct:  125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679
            V + P   ++D+ GL+   + +KEAV LP+  P L+   G + P +G++L+G PGTGK+ LAKAVA  + ++TF  +  S+L+ K+LG+  KLV+ LF++A +  PSI+FIDEID++   R +  S   R I+    E L Q+ G     D  ++LG   I   LD A+ R  R +++I    P
Sbjct:  125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIE-SLDPALLRPGRIDRKIDFLFP 679
            V + P   ++D+ GL+   + +KEAV LP+  P L+   G + P +G++L+G PGTGK+ LAKAVA  + ++TF  +  S+L+ K+LG+  KLV+ LF++A +  PSI+FIDEID++   R +  S   R I+    E L Q+ G     D  ++LG   I   LD A+ R  R +++I    P
Sbjct:  125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 62/153 (40.52%), Postives = 93/153 (60.78%), Query Frame = 2
Query:  224 LTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            L +P+L+   G   PK V+ YG PGTGKTL+A+A+A  T+++F+ V   ELI +++GD  K++REL++ A + +P IVFIDE+DA+G  R Y +  G   ++   +  LL +LDG      V  I  TN    LDPA+    R + +I+F  P
Sbjct:  143 LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRG---DVSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLP 287          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
KTNA1_DANRE7.021e-2439.04Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
ATAD1_RAT7.021e-2440.00ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE7.021e-2440.00ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN7.021e-2440.00ATPase family AAA domain-containing protein 1 OS=H... [more]
ATD1B_DANRE9.169e-2441.21ATPase family AAA domain-containing protein 1-B OS... [more]
KTNA1_ARATH1.198e-2338.46Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
VPS4B_MOUSE1.564e-2338.04Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN1.564e-2338.04Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN1.564e-2338.04Vacuolar protein sorting-associated protein 4B OS=... [more]
PRS2_METJA2.043e-2340.52Putative 26S protease regulatory subunit homolog M... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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