FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 60/159 (37.74%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILG-TNRIESLDPALLR 640
            +IGG +  + E+K+ + LPL          + PP+G++LYG PG GKTLLAKAVA +    F+ +  S L  K+ G+  KL   +F VA    P+I+FIDEID+      D  S           + +   DGF S GD  +++G TNR   +D A+LR
Sbjct:   84 EIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSF---LRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR 239          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 73/188 (38.83%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + + P   + DI  L    + ++EAV LP+  PE ++ I  +P KGV++ G PGTGKTLLAKAVA     TF  V  S L  KY G+  KLVR LF +A   SP+ +FIDEID++ ++R    S      +R   ELL Q+DG     +       V V+  TN    +D AL R  R++++I    P
Sbjct:  200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 382          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 66/180 (36.67%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVADD----LSPS----IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +   I + A    +  PEL E +G K  KG++LYG PGTGKTL+A+ +    +A   ++V G +++ KY+G+    VR LF  A++    L P+    I+  DEIDA+  K+  + +G        + +LL ++DG D   ++ VI  TNR + +D ALLRPGR++ +++   P
Sbjct:  220 IGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAI-CKQRGSVAGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLP 398          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 74/188 (39.36%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + + P   + DI  L    + +KEAV LP+  PE ++ I  +P KGV++ G PGTGKTLLAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  201 ISQNPNIRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 383          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 381          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  197 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 379          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 381          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 381          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 381          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  197 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 379          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
MSP1_CAEEL5.943e-2337.74Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
KTNA1_RAT5.943e-2338.83Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
NSF1_DROME7.762e-2336.67Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
KTNA1_CHICK7.762e-2339.36Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KATL1_SORAR7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
back to top