FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 381          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVA--------DDLSPSIVFIDEIDAVGTKRYDAHSGGEREI-QRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD++   I + A    L  P + E +GI   KG++LYG PGTGKTL+A+ +    +A   ++V G E++ KY+G   + VR+LF  A        ++    I+  DE+DA+  KR    SGG+  +  + + +LL ++DG D   ++ VI  TNR + +D ALLRPGR++  ++   P
Sbjct:  271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKR--GSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLP 449          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 65/180 (36.11%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVADD----LSPS----IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +   I + A    +  PEL E +GIK  KG++LYG PGTGKTL+A+ +    +A   ++V G +++ KY+G+    +R LF  A++    L P+    I+  DEIDA+  K   + +G        + +LL ++DG +   ++ VI  TNR + +D ALLRPGR++ +++   P
Sbjct:  225 IGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAI-CKARGSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLP 403          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 72/188 (38.30%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + P   + DI  L+   + ++EAV LP+  P+ ++ I  +P KGV++ G PGTGKT+LAKAVA     TF  V  S L  KY G+  KLVR LF +A   +P+ +FIDEID++  +R    S      +R   ELL Q+DG        D    V V+  TN    +D AL R  R++++I    P
Sbjct:  197 VSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRR--GTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 379          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  149 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 556
            P   + DI GLDA  + +KEAV  P+ +P+L+  I + P KG++LYG PGTGKTLLAKAVA   + TF  +  S ++ K+ GD  KLVR LF +A   +PS +F+DE+++V ++R      G  E+   ML  L +
Sbjct:  253 PNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR----GTGPGELDYAMLRRLEK 383          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 532
            DI GL+     +KEAV  P   P+L++ +  +P +G++L+G PGTGKT+LA+AVA  + + F  +  S L  K+LG+  KLVR LF +A  LSPSI+F+DEID++ + R  +  G E E  R
Sbjct:  460 DISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR--SSDGNEHETSR 578          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 65/194 (33.51%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   74 KLLSVVGLLQDEVDPMVSVMKVEKAPLE-SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVQVIL--GTNRIESLDPALLR 640
            K + V G+   E +  ++ + V+   ++ ++ D+ GLD  I E+++ V LP     L+    + +PPKGV+LYG PG GKTL+AKA A ++   F+ +  S L  K+ G+  KL   +F +A  + P I+F+DEID+    R    S  + E    M  + ++  DG D+  + QV++   TNR + +D A+LR
Sbjct:   63 KQIGVEGVSLTEYEMNIATLLVDPRSIKVTWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNR----SSMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILR 252          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 65/181 (35.91%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +  +I + A    +  PE+ E +G K  KG++LYG PG GKTLLA+ +    +A   +VV G E++ KY+G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K++   P
Sbjct:  220 IGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 65/181 (35.91%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +  +I + A    +  PE+ E +G K  KG++LYG PG GKTLLA+ +    +A   +VV G E++ KY+G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K++   P
Sbjct:  220 IGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 65/181 (35.91%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +  +I + A    +  PE+ E +G K  KG++LYG PG GKTLLA+ +    +A   +VV G E++ KY+G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K++   P
Sbjct:  220 IGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
KATL1_HUMAN7.762e-2338.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SEC18_SCHPO2.258e-2236.46Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
NSF2_DROME2.950e-2236.11Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
KATL1_DANRE2.950e-2238.30Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL2_XENLA3.852e-2243.38Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
YKX4_SCHPO5.031e-2244.26Uncharacterized AAA domain-containing protein C328... [more]
ATD1A_DANRE6.571e-2233.51ATPase family AAA domain-containing protein 1-A OS... [more]
NSF_RAT8.582e-2235.91Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB8.582e-2235.91Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE8.582e-2235.91Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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