FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 65/181 (35.91%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +  +I + A    +  PE+ E +G K  KG++LYG PG GKTLLA+ +    +A   +VV G E++ KY+G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K++   P
Sbjct:  220 IGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 65/181 (35.91%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +  +I + A    +  PE+ E +G K  KG++LYG PG GKTLLA+ +    +A   +VV G E++ KY+G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K++   P
Sbjct:  220 IGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21
Identity = 62/180 (34.44%), Postives = 99/180 (55.00%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVA--------DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLDA+ ++I + A    +  P + + +G+   KG++LYG PGTGKTL+A+ +    +    +VV G  ++ KY+G   + +R LFR A        DD    I+  DE+DA+  K   +  G        + +LL  +DG +S  ++ VI  TNR + +D ALLRPGR++  ++   P
Sbjct:  224 IGGLDAEFRDIFRRAFSSRIFPPAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAI-CKSRGSRQGDSGVGDSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLP 402          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21
Identity = 61/181 (33.70%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVADD--------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            IGGLD +   I + A    +  PE  E +G+K  +G++L+G PGTGKTL+A+ +    +A   ++V G +++ KY+G+    VR+LF  A++            I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ +++   P
Sbjct:  297 IGGLDTEFSHIFRRAFASRVFPPEFIEQLGMKHVRGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR--GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLP 475          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 66/207 (31.88%), Postives = 108/207 (52.17%), Query Frame = 2
Query:  113 DPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG------------------GEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            D  +S ++   A   ++ DIGG+++  QE+  A    L   + Y +     P G +  G PGTGKTL+AKA++      +L V GS+   +  G     V +LF+   ++SP I++IDEID++  +R +A+                     ++     +++ L  +DG+  R D+ +I  TNRIE+LD A++RPGR DR+I F  P
Sbjct:  332 DIEISTIQKFVAKAITFRDIGGMESLKQEL--ATVAFLLKQKNYSN---SYPMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPP 533          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 61/180 (33.89%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  170 IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELFRVA--------DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +GGLD +  +I + A    +  P + E +GI   KG++LYG PGTGKTL+A+ +    +A   ++V G E++ KY+G   + +R LF+ A        ++ S  I+  DE+D+V  K+  +   G       + +LL ++DG D   ++ VI  TNR + +D ALLRPGR + +++   P
Sbjct:  241 VGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSV-FKQRGSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLP 419          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 58/176 (32.95%), Postives = 98/176 (55.68%), Query Frame = 2
Query:  119 MVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD--VQVILGTNRIESLDPALLR 640
            MV+   +++     ++DI GL+     IK+ V  P+  P+++  +   P + ++L+G  GTG+TLL + +A+   A FL + GS L+ K+LG+G K+V+  F +A    PS+VFI ++D +      +    E  + R   ELL QLDG  S  +  V V+  T++ E +D +L R
Sbjct:  449 MVTTEILQQTSPVDWSDIAGLEMAKATIKDEVLWPILRPDMFSGLATLP-RSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLL----LSSQLSEESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR 619          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 66/195 (33.85%), Postives = 108/195 (55.38%), Query Frame = 2
Query:  125 SVMKVEKAPLESYADIGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGPKLVRELF-------RVADDLSP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            ++ K ++  LES   IGGL A+  +I + A    +  P +   +GIK  KG++L+G PGTGKTL+A+ +    +    ++V G E++ K++G+  K VR+LF       R   D S   ++  DEIDA+   R     G        + +LL ++DG ++  +V +I  TNR + LD ALLRPGR++ +++   P
Sbjct:  203 NIFKHKEFNLESLG-IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLP 395          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  224 LTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG-TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            L  P+ + D     P+ V+ +G PGTGKT+LAK++AN        +  + LI +++GDG + + EL+ +A   +PS++FIDE+DA+G  +RY +  G   ++   +  LL ++DG +    V  I  TN  E LD A+    R + +I+F  P
Sbjct:  146 LEDPDRFRDWA---PRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRG---DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLP 290          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 53/156 (33.97%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  224 LTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG-TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            L  P+ + D     P+ V+ +G PGTGKT+LAK++AN        +  + LI +++GDG + + EL+ +A   +PS++FIDE+DA+G  +R+ +  G   ++   +  LL ++DG +    V  I  TN  E LD A+    R + +I+F  P  D
Sbjct:  146 LEDPDRFRDWA---PRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRG---DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDD 293          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
NSF_HUMAN8.582e-2235.91Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR8.582e-2235.91Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
NSF_DICDI4.259e-2134.44Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
NSF_CAEEL4.259e-2133.70Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
YCF2_MESVI5.563e-2131.88Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
SEC18_YEAST1.239e-2033.89Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
FIGN_DANRE8.033e-2032.95Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
NSF_ARATH1.370e-1933.85Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
PRS2_METTH1.789e-1934.64Putative 26S protease regulatory subunit homolog M... [more]
PRS2_METTM5.207e-1933.97Putative 26S protease regulatory subunit homolog M... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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