FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 54/171 (31.58%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID-AVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DSRGDVQVILGTNRIESLDPALLR 640
            + + P   ++DI GLD     IKE V  P+   + +  +   P + ++L+G  GTGKTLL + +A+   ATF ++ GS L+ K++G+  K++   F VA    PS++F+ +ID  + ++  + HS     + R   E L QLD     +   + VI  T++ E +D +L R
Sbjct:  477 ITQGPPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALP-RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHS----PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR 642          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 55/171 (32.16%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  137 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID-AVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DSRGDVQVILGTNRIESLDPALLR 640
            + + P   + DI GLD     IKE V  P+   + +  +   P + ++L+G  GTGKTLL + +A+   ATF ++ GS L+ K+LG+  K++   F VA    PS++F+ +ID  + ++  + HS     + R   E L QLD     +   + VI  T++ E +D +L R
Sbjct:  477 ITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALP-RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHS----PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR 642          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  149 PLESYADIGGLDAQIQEIKEAVEL-PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT-KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRID 655
            P+   +DIGGL+    E+K  ++    +  +  E+ G+  PKG++L G  GTGK+L AK++AN  +   L++    L    +G+    VR++ + A+ +SP I++IDEID   T   ++  SG  + +  T +  L+     + +  V V+   N I+SL P LLR GR D
Sbjct:  239 PVTKISDIGGLN----ELKSWLKFRAASFSKRAEEYGLPIPKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLS-----EKKSPVFVVATANNIDSLPPELLRKGRFD 400          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 53/171 (30.99%), Postives = 86/171 (50.29%), Query Frame = 2
Query:  179 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG---------FDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            L   + ++ + + + + +P  Y +  +   +GV+L G PGTGKTL A+ +A  +   F+   G+E          K + E+F +A   +P+ VF+DEIDA+  +    H+  +   + T   L+ QLDG         F  R  V  I  TNR + LD   +R GRIDR++
Sbjct:  497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAK-INEMFSIARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRL 662          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YCF46_PORPU (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra purpurea GN=ycf46 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY-DAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRID 655
            DIGGLDA    +K+      +  +   + GI  PKG++L G  GTGK+L AKA+AN  +   LR+   +L    +G+    +RE+  +A+ LSP +++IDEID   +  Y    SG    +  T +  L+     +    V V+   N I++L   +LR GR D
Sbjct:  229 DIGGLDALKSWLKKRSR---SFSKQSFNYGIPTPKGLLLVGIQGTGKSLTAKAIANDWTLPLLRLDIGKLFGGLVGESESRMREMVTIAEGLSPCVLWIDEIDKAFSNLYSQGDSGTSARVFGTFITWLS-----EKTTPVFVVATANTIQNLPSEMLRKGRFD 384          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YCF46_PORYE (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra yezoensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  167 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID-AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRID 655
            DIGGLD   Q +++      +  +   + GI  PKG++L G  GTGK+L AKA+A+      LR+   +L    +G+    +RE+  +++ LSP I++IDEID A         SG    +  T +  L+     + +  V V+   N+I+SL   +LR GR D
Sbjct:  229 DIGGLDVLKQWLQKRSR---SFSKQSLNYGIPSPKGLLLVGIQGTGKSLTAKAIASDWMLPLLRLDMGKLFGGLVGESESKMREMINISEGLSPCILWIDEIDKAFSGLHSQGDSGTSARVFGTFITWLS-----EKKAPVFVVATANKIQSLPSEMLRKGRFD 384          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 60/184 (32.61%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  110 VDP----MVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRG--DVQVILGTNRIESLDPALLR 640
            VDP    +V+   V+  P   +AD+ G  A    ++E +  PL  P  Y    ++PP+ V+L+G  G GK LL + +A    AT LR+ G+ L      +G +L++  F  A    PS++ I E++A+   R D A +GG  ++      LL  LDG    G   V V+  T+R  +LD A  R
Sbjct:  370 VDPGALELVTSKMVDCGPPVQWADVAGQGALKAALEEELVWPLLRPPAYPG-SLRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPARDDGAAAGGALQV-----PLLACLDGGCGAGADGVLVVGTTSRPAALDEATRR 547          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 64/203 (31.53%), Postives = 102/203 (50.25%), Query Frame = 2
Query:  110 VDPMVSVMKVEKAP---LESYADIGGLDAQIQEIKEAVELPL-THPELYEDIGIKPPKGVILYGEPGTGKTLLAK---AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL-------SP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGR--IDRKID 667
            ++  V   ++ K P   LE Y  +GG+  +++ +   + L      + Y   G++P KG+IL+G PGTGKT L++    +       F  + G E+  K++G     +R +F+ A D        SP  +V IDEIDA+   R  + S G       + + L ++DG +   ++  I  TNR+E LDPA +R GR  I  KID
Sbjct:  549 INNSVEQTEISKNPVQELEKY--VGGISKELETVVRTLCLSRGILKQEYLARGLRPVKGIILHGPPGTGKTSLSRNLGKILGCEGDRFRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKID 747          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: YCF46_GRATL (Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria tenuistipitata var. liui GN=ycf46 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  245 EDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP-ISD*ETYFQI 709
            ++ G+  PKG++L G  GTGK+L+AKA++   +   L++   ++    +G   + +R + + A+  SP I++IDEID   T+  +   SG    +  TML  L+     + +  V VI   N++ SL   LLR GR D       P + + E  FQI
Sbjct:  253 KNYGLTVPKGILLIGIQGTGKSLIAKAISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLTWLS-----EKKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQI 404          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: BCS1_XENLA (Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 59/178 (33.15%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  143 KAPLESYADIGGLDAQI-QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQR----TMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRK 661
            + PL S     G+  +I Q++K  +E    +P+ Y D GI   +G +LYG PG GK+    A+A     +   +    L    L D    +  L  VA     SI+ ++++DA    R D +       Q     T   LLN LDG  S     V + TN I+ LDPAL+RPGR+D K
Sbjct:  185 RRPLSSVVLEQGISEKIVQDVKGFIE----NPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLM---SLSDSSLSDDR--LNHLLSVAPQ--QSIILLEDVDAAFVSR-DLNKQNPTAYQGMGRLTFSGLLNALDGVASTEARIVFMTTNHIDRLDPALIRPGRVDVK 350          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
FIGN_MOUSE5.757e-1831.58Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
FIGN_HUMAN7.518e-1832.16Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
YCF46_GUITH1.418e-1632.75Uncharacterized AAA domain-containing protein ycf4... [more]
FTSHC_ARATH5.957e-1530.99Cell division protease ftsH homolog 12, chloroplas... [more]
YCF46_PORPU1.016e-1433.54Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_PORYE2.264e-1432.93Uncharacterized AAA domain-containing protein ycf4... [more]
FIGL2_HUMAN1.123e-1332.61Putative fidgetin-like protein 2 OS=Homo sapiens G... [more]
YR476_MIMIV2.503e-1331.53Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
YCF46_GRATL4.269e-1331.85Uncharacterized AAA domain-containing protein ycf4... [more]
BCS1_XENLA3.059e-1133.15Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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