FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: BCS1A_DICDI (Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 2 
Query:  206 EAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSP-SIVFIDEIDAVGTKRYDA----HSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKI 664
            E ++  +T+   Y + GI   +G +LYGEPG GK+ L  A+A   +     V    L  K + D     +++  + ++  P SI+ I++IDA      D     ++        T   LLN LDG  S+    + + TN+IE LD AL+R GRID KI
Sbjct:  201 EDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIV---SLSSKDIDD-----KQINHLLNNAPPKSILLIEDIDAAFKSHRDNVDSNNNNSNNNNSLTYSGLLNALDGVASQEGRILFMTTNKIELLDSALIREGRIDLKI 350
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
BCS1A_DICDI5.219e-1132.91Probable mitochondrial chaperone BCS1-A OS=Dictyos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
back to top