FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:485..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.885e-69
Identity = 125/223 (56.05%), Postives = 174/223 (78.03%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            + V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LD ALLRPGRIDRKI+F
Sbjct:   95 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.885e-69
Identity = 125/223 (56.05%), Postives = 174/223 (78.03%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            + V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LD ALLRPGRIDRKI+F
Sbjct:   95 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.885e-69
Identity = 125/223 (56.05%), Postives = 174/223 (78.03%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            + V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LD ALLRPGRIDRKI+F
Sbjct:   95 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.463e-69
Identity = 123/215 (57.21%), Postives = 173/215 (80.47%), Query Frame = 2
Query:   26 VDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            VD + +   C + + N+  ++  +L ++VDP+VS+M VEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SGG+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LDPALLRPGRIDRKI+F
Sbjct:   99 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 313          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.216e-69
Identity = 121/226 (53.54%), Postives = 173/226 (76.55%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I  +++++ L+PG  + +  + +++V LL  E DP V   +V + P  SY DIGGLD Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKA+A+  +ATF+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD  G+V++I  TNR + LDPALLRPGR DR I+   P
Sbjct:   85 FVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLP 310          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.200e-69
Identity = 127/223 (56.95%), Postives = 173/223 (77.58%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            Y V +   V+ D+L+ G  + + +    V  +L  +VDP+VS+M VEK P  +Y  IGGLD QI+EI+E +ELP+ HPEL+E++GI  PKGV+LYG PGTGKTLLA+AVA+ T   F+RV GSEL+QKY+G+G +LVRELF +A + +PSI+F+DEID++G+ R D++ G + E+QRTMLELLNQLDGF+S  +++VI+ TNRI+ LDPALLR GRIDRKI+F
Sbjct:  142 YLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEF 364          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.486e-69
Identity = 121/226 (53.54%), Postives = 172/226 (76.11%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I  ++++D+L PG  + +  + ++++ LL    DP V   +V + P  +Y DIGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +ATF+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+V+VI  TNR + LDPALLRPGR DR I+   P
Sbjct:   86 FVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 311          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.165e-69
Identity = 121/226 (53.54%), Postives = 171/226 (75.66%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I  ++DK +L PG  + +  + ++++ +L    DP V   +V + P  +Y DIGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +ATF+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+V+VI  TNR + LDPALLRPGR DR I+   P
Sbjct:   83 FVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 308          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.165e-69
Identity = 125/229 (54.59%), Postives = 176/229 (76.86%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            + V +  FV+ D + PG  + ++ + L+VV +L  E D     M++E+ P   + DIGGL+ QI++IKE VELPL +PEL+E +GI PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDV++I  TNR + LDPA+LRPGR DR I+   P  D
Sbjct:   94 FLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDED 322          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.165e-69
Identity = 125/230 (54.35%), Postives = 177/230 (76.96%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            Y V I   +D  +++P   + + N    ++ +L ++VDP+VS+M VEK P  +Y  +GGL+ QI+EIKE +ELP+ HPEL+E +GI  PKG++LYG PGTGKTLLA+AVA+ T   F+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R D+  G G+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LDPALLRPGRIDRKI+F  P ++
Sbjct:   91 YVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAE 320          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS8_MOUSE1.885e-6956.0526S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.885e-6956.0526S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.885e-6956.0526S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_MANSE2.463e-6957.2126S protease regulatory subunit 8 OS=Manduca sexta... [more]
PSMR_THEON3.216e-6953.54Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS8_ENCCU4.200e-6956.9526S protease regulatory subunit 8 homolog OS=Encep... [more]
PSMR_PYRAB5.486e-6953.54Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRFU7.165e-6953.54Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_METVS7.165e-6954.59Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS8_SCHPO7.165e-6954.3526S protease regulatory subunit 8 homolog OS=Schiz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
back to top