FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.357e-69
Identity = 124/226 (54.87%), Postives = 173/226 (76.55%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V     +D D L+PG    ++ + L++V +L    D  +  M++ ++P E+Y +IGGL+ QI+EI+EAVELPLT P+L+E +GI PPKGV+LYG PGTGKTLLA+AVA+ T+A FLRVVGSEL+QKY+G+G +LVRELF +A   +PSI+FIDEIDA+G  R D+ + G+RE+QRT+++LL ++DGFD+RGDV+++  TNRI+ LD ALLRPGR DR I+   P
Sbjct:   99 FLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLP 324          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.222e-68
Identity = 121/226 (53.54%), Postives = 169/226 (74.78%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGKTLLA+A A  T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     V+VI  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:  132 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 357          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.222e-68
Identity = 121/226 (53.54%), Postives = 169/226 (74.78%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGKTLLA+A A  T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     V+VI  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:  132 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 357          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.596e-68
Identity = 121/226 (53.54%), Postives = 169/226 (74.78%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGKTLLA+A A  T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     V+VI  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:  116 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 341          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.085e-68
Identity = 122/229 (53.28%), Postives = 172/229 (75.11%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            + V    F++  ++ PG  + ++ + L+V+ +L    DP V  M+V  +P   Y  IGGL+AQI E+KE VELPL  PEL++ +GI+PPKGV+LYG PGTGKTLLAKAVAN T ATF+R++GSEL+QKY+G+G ++VRELF +A + SPSI+FIDEID++G KR D+ + G+RE+QRT+++LL ++DGFD RG+V+++  TNR + LDPALLRPGR DR I    P ++
Sbjct:  105 FVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAE 333          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.085e-68
Identity = 122/226 (53.98%), Postives = 171/226 (75.66%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I  ++D+ +L PG  + +  + ++VV +L    DP V   +V + P  +Y DIGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +ATF+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+V+VI  TNR + LDPALLRPGR DR I+   P
Sbjct:   86 FVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 311          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.723e-68
Identity = 120/226 (53.10%), Postives = 169/226 (74.78%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y++ ++  VD ++L+PG  + ++     ++  L  + D  V  M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGKTLLA+A A  T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     V+VI  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:  135 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 360          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.644e-68
Identity = 128/227 (56.39%), Postives = 177/227 (77.97%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS-GGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V I   VD  +L P     + ++  ++  +L +++DP+VS+MKVEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ S GG+ E+QRTMLELLNQLDGF+S  +++V++ TNRI+ LDPALLRPGRIDRKI+F  P
Sbjct:   91 FVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNP 317          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.644e-68
Identity = 125/225 (55.56%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y GI   VD D+L PG  + ++     ++  L  E D  V  M++++ P E Y+DIGGLD QIQE+ EAV LP+TH E +E IGIKPPKGV++YG PGTGKTLLA+A A  T++T+L++ G +L+Q ++GDG KLVR+ F +A +  P+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S  +++VI  TNRI+ LDPALLR GR+DRKI+F  P
Sbjct:  118 YPGI---VDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLP 339          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.065e-68
Identity = 128/227 (56.39%), Postives = 173/227 (76.21%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y V I   +D  +L P   + + N    +  +L  +VDP+V++MKVEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   ++V++ TNRI+ LD ALLRPGRIDRKI+F  P
Sbjct:  107 YVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PSMR_METMJ9.357e-6954.87Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS6A_RAT1.222e-6853.5426S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.222e-6853.5426S protease regulatory subunit 6A OS=Homo sapiens... [more]
PR6AA_XENLA1.596e-6853.5426S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PSMR_UNCMA2.085e-6853.28Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_PYRHO2.085e-6853.98Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PRS6A_MOUSE2.723e-6853.1026S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS8_DICDI4.644e-6856.3926S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS6A_DICDI4.644e-6855.5626S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS8B_ARATH6.065e-6856.3926S protease regulatory subunit 8 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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