FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.398e-64
Identity = 116/226 (51.33%), Postives = 165/226 (73.01%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG   QI++++E VELP+ HPE +  +GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG+++V++ TNR ++LDPALLRPGR+DRK++F  P
Sbjct:  114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.385e-64
Identity = 118/226 (52.21%), Postives = 162/226 (71.68%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + VG+   V    +E G  + +     ++   L   +DP V++M VE+ P  +Y+D+GG   QI++++E VELPL  PE +  +GI PPKG++LYG PGTGKTL A+AVAN T ATF+RV+GSEL+QKY+G+G ++VRELF +A      I+F DEIDAVG  R+D  +GG+ E+QRTMLEL+ QLDGFD RG+++V+  TNR  +LDPALLRPGRIDRK++F  P
Sbjct:  155 FVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 116/213 (54.46%), Postives = 162/213 (76.06%), Query Frame = 2
Query:   41 LEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            LEPG  + ++N L SVV  L DE D    VM+V+ +P   Y DIGGLD Q++E++E VELP+  P L+E +GI PP GV+L+G PGTGKTL+AKAVA+ T A+F+++ GSEL+ K++G+G KLVR+LF+VA D  P++VFIDEIDA+ +KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I  TNR + LD A+LRPGR DR I+   P
Sbjct:  109 LEPGSRVAVNNSL-SVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHP 320          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 114/226 (50.44%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 119/227 (52.42%), Postives = 162/227 (71.37%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVS--VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y+ I   +   +L PG  + +H     V   L  + D  V   V+K +  P E+Y DIGGL+ QI+E+ EA+ L LTHPE +E + IKPPKGV++YG PGTGKTL+A+A A+ T+ATFL++ G +L+Q Y+GDG +LVR+ F +A +  P+I+FIDEIDA+G KR D+   G+RE+QRTMLELLNQLDGF S  +V++I  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:   93 YLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLP 319          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS7A_ARATH1.398e-6451.3326S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_YEAST2.385e-6452.2126S protease regulatory subunit 7 homolog OS=Sacch... [more]
PSMR2_HALSA3.115e-6454.46Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS7_XENLA4.068e-6450.4426S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_PONAB4.068e-6450.4426S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_MOUSE4.068e-6450.4426S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA4.068e-6450.4426S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN4.068e-6450.4426S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN4.068e-6450.4426S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS6A_ENCCU4.068e-6452.4226S protease regulatory subunit 6A OS=Encephalitoz... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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