FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.314e-64
Identity = 115/226 (50.88%), Postives = 167/226 (73.89%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +  ++D+ +L PG  + ++   L++  ++    +P V+ M+V ++    Y  IGGLD QIQE++EAVELPL  PE +  IGI+PPKGV+LYG PGTGKTLLAKAVA+ T+ATF+RVVGSEL+QKY+GDG KLVRE+F +A   +PSI+FIDE+D++  +R +  +G +RE+QRT+++LL ++DGFD R ++++I  TNR + LDPA+LRPGR DR +    P
Sbjct:  105 FLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMP 330          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.314e-64
Identity = 113/228 (49.56%), Postives = 167/228 (73.25%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            ++ ++  VD D+L+P   + ++     ++  L  E D  V  M+V++ P E+Y+D+GGLD QI+E+ EA+ LP+   + ++D+GI+ PKG ++YG PGTGKTLLA+A A  T+ATFL++   +L+Q Y+G+G KLVR+ F +A + +P+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   V+V+  TNR++ LDPALLR GR+DRKI+F  P  D
Sbjct:  128 FLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.940e-64
Identity = 117/226 (51.77%), Postives = 163/226 (72.12%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y VG+        +E G  + +  K   +   L  ++DP V++M VE+ P  +Y+DIGG   QI++I+E VELP+ HPE +  +GI PPKGV+ YG PG+GKTL+A+AVAN T A F+RVVGSEL+QKY+G+G ++VRELF++A      I+F DEIDA+G  R+D   G + E+QRTMLE+L QLDGFD+RG+++V++ TNR + LDPALLRPGR+DRK++F  P
Sbjct:  151 YVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLP 376          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 113/224 (50.45%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    8 VGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+LAKAVA  ++A F+ VV SE  QK++G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +V++I  TNRI+ LDPALLRPGR DR I+   P
Sbjct:   82 VNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.637e-63
Identity = 113/226 (50.00%), Postives = 165/226 (73.01%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            + V +   V    +E G  + +      +   L  ++DP V++M+VE+ P  +Y+D+GG   QI++++E VE PL HPE + ++GI+PPKGV+L+G PGTGKTL A+AVAN T A F+ V+GSEL+QKY+G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG+++V++ TNR ++LDPAL+RPGR+DRKI+F  P
Sbjct:  121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PSMR_METAC5.314e-6450.88Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_YEAST5.314e-6449.5626S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS7B_ARATH6.940e-6451.7726S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_SULIY9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA9.063e-6450.45Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS7_RAT2.637e-6350.0026S protease regulatory subunit 7 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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