FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 72/132 (54.55%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            IN ++ DA S KTFP  +P T EVI  VAEGD ED+D+AV  AR AF  G PW +M    R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   41 INNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 171          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 72/132 (54.55%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            IN ++ DA S KTFP  +P T EVI  VAEGD ED+D+AV  AR AF  G PW +M    R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   41 INNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 171          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 77/160 (48.12%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  202 ISRFSTAAVVEEPIIPPVQISYTKN--LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +SR  +AA       P  Q     N   IN ++ DA S KTFP  +P T EVI  VAEG+ ED+D+AV  A+ AF  G PW +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   15 LSRLLSAAATSAVPAPNQQPEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 173          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 72/148 (48.65%), Postives = 98/148 (66.22%), Query Frame = 1
Query:  211 FSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +STAA +  PI P  +I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+D AV  AR+AF  G PW +M   ER R++ R ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y AGWADK HG T+P DG
Sbjct:   21 YSTAAALPNPI-PNPEIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGKTIPMDG 167          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 71/132 (53.79%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            IN ++ DA S KTFP  +P T EVI  VAEG  ED+D+AV  AR AF  G PW +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   24 INNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 154          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 65/143 (45.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:  247 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            P ++I YTK  IN ++ ++ SG+ FPVY+P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++   YYAGWADKIHG+T+P DG+  F FT
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGD-YFTFT 172          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 65/143 (45.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:  247 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+  F FT
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGD-YFTFT 172          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 65/143 (45.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:  247 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+  F FT
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGD-YFTFT 172          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 67/151 (44.37%), Postives = 97/151 (64.24%), Query Frame = 1
Query:  235 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +P +P     ++I +TK  IN ++ D+ S K FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   +V + ++ L Y+AGWADKIHG T+P DGN IF +T
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGN-IFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 63/141 (44.68%), Postives = 94/141 (66.67%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++I YTK  IN ++ ++ SG+ FPVY+P T E I ++ E D  D D+AV  AR AF  G  W +M   ER  ++ + ADL+E++   LA +E+ N+GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+  F FT
Sbjct:   33 LEIKYTKIFINNEWQNSESGRIFPVYNPATGEQICDIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGHLLDKLADLVERDRAILATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGD-YFTFT 172          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
ALDH2_PONAB2.208e-3254.55Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN2.208e-3254.55Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_RAT3.766e-3248.13Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
AL1B1_RAT4.919e-3248.65Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
ALDH2_MESAU6.425e-3253.79Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
AL1A2_HUMAN7.103e-3145.45Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A2_RAT2.699e-3045.45Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE2.699e-3045.45Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A7_MOUSE1.026e-2944.37Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A2_TAEGU1.750e-2944.68Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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