FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  274 NLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADK-IHGLTVP 642
            + ING++V+   G       P T EVIA +       +++A+A A++A  E  W  M+P  R RI+ RAAD++ +   EL+ LET + GKP  +++ ++         ++ G A   ++G  +P
Sbjct:    9 HFINGEYVEDTDGTVIESLYPATGEVIARLHAATPAIVEKAIAAAKRAQPE--WAAMSPMARGRILKRAADIMRERNRELSELETLDTGKPIQETIVADPTSGADAFEFFGGVAPAGLNGSHIP 130          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BRUSU (Betaine aldehyde dehydrogenase OS=Brucella suis GN=betB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 41/138 (29.71%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  274 NLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT*TIGV 687
            + I G FV+  +GK  PV  P T E IA++       I+ A A A KA  +G W  + P ER RI+ R A+++ +   +L+ LET + GK   ++L ++       L ++ G     +G  V   G+  +     +G+
Sbjct:    9 HFIGGAFVEDKAGKPLPVIYPATDEEIASLYSATPGIIEAAYAAALKA--QGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFVELGGSFAYTRREALGI 144          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BRUC2 (Betaine aldehyde dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 41/138 (29.71%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  274 NLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT*TIGV 687
            + I G FV+  +GK  PV  P T E IA++       I+ A A A KA  +G W  + P ER RI+ R A+++ +   +L+ LET + GK   ++L ++       L ++ G     +G  V   G+  +     +G+
Sbjct:    9 HFIGGAFVEDKAGKPLPVIYPATDEEIASLYSATPGIIEAAYAAALKA--QGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFVELGGSFAYTRREALGI 144          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAG 609
            KN I GQ+V ++  +T  V +P T EV+A V     ED+D+AV  A+KAF    W  +   +R+RIM     L+ ++ EELA L    NGK Y ++   E+   +  + + AG
Sbjct:   12 KNYIGGQWVASSGTETLEVPNPATGEVLARVPISTKEDVDQAVQAAKKAF--ATWKDVPVPKRARIMFSFHHLLNQHHEELAELVVQENGKAYKEA-YGEIQRGIECVEFAAG 121          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_AGRT5 (Betaine aldehyde dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 40/139 (28.78%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  274 NLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWA-DKIHGLTVPGDGNTIFNFT*TIGV 687
            + I+G +V+  +G  F    P T E+IA +       ++RA+A+A++A  E  W  M+P  R RI+ RAAD++ +  + L+ LET + GKP  +++ ++         ++ G A   ++G  +P  G+  +     +GV
Sbjct:   15 HFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKE--WAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSGADAFEFFGGIAPSALNGDYIPLGGDFAYTKRVPLGV 151          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL8A1_MOUSE (Aldehyde dehydrogenase family 8 member A1 OS=Mus musculus GN=Aldh8a1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYA 606
            +N I G+F+   S      YDP T EV   V     E+I+ AV  AR+AF    W   +P ERS ++ R AD++E+++EELA  E+ + GK    +   ++P  V    ++A
Sbjct:   11 ENFIGGKFLPCNS--YIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAFPA--WSSRSPQERSLVLNRLADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFA 118          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
BETB_RHIEC4.787e-1130.65Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_BRUSU4.787e-1129.71Betaine aldehyde dehydrogenase OS=Brucella suis GN... [more]
BETB_BRUC24.787e-1129.71Betaine aldehyde dehydrogenase OS=Brucella canis (... [more]
IOLA1_GEOKA6.252e-1136.28Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_AGRT56.252e-1128.78Betaine aldehyde dehydrogenase OS=Agrobacterium tu... [more]
AL8A1_MOUSE8.165e-1134.82Aldehyde dehydrogenase family 8 member A1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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