FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  214 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            S++A+ + P  +  +Q  YTK  IN ++  + SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN  F +T
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGN-FFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  214 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            S++A+ + P  +  +Q  YTK  IN ++  + SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN  F +T
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGN-FFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++I +TK  IN ++ ++ SGKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG   F++T
Sbjct:   16 IKIQHTKLFINNEWHESVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASAYLMDLDYCIKALRYCAGWADKIQGRTIPVDGE-FFSYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 62/151 (41.06%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  235 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +P +P     ++I +TK  IN ++ ++ +GK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER  ++ + ADL+E++   LA +E+ N GK +  +   +  + ++ L Y+AGWADKIHG T+P DG+ +F +T
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGD-VFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            INGQF+DA  GKT+   +P     I  V+     DIDRAVA A++AF+ G W KM P +R RI+ R AD++E++ EELA +E+ ++G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 INGQFIDAEGGKTYDTVNPTDGTAICKVSLAQVSDIDRAVAAAKEAFENGEWGKMNPRDRGRILYRLADIMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTI 660
            +++ +TK  IN ++ ++ SGK F   +P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R R++ + ADL+E++   LAALET + GKP++ +   ++   +R L Y+AGWADKI G T+P D N +
Sbjct:   27 LEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVV 163          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  256 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +I +TK  IN QFVD+ +GK + V +P T + I +V EG   DID+AV   + AF  G PW +M    R  ++ R ADL E+++  L++LET N GKPY +S   ++   +++L YYAGWADK  G  +P DG+  F+FT
Sbjct:   12 EIKFTKIFINNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPY-KSAYQDIVHCIQVLRYYAGWADKNMGQNIPVDGD-FFSFT 149          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            INGQF+DA  GK++   +P     I  V+     DIDRAVA A++AF+ G W KM P +R R++ R ADL+E++ EELA +E+ ++G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 INGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGRTIP 546          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            V+I Y +  INGQFVDA  G+T+   +P     I  V+     D+DRAVA A+ AF+ G W +M   +R R+M R ADL+E+N EELA +E  ++G  Y  +L + + M V+   Y+AGW DKI G T+P
Sbjct:  439 VKIPY-QCFINGQFVDAEDGETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIP 567          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            INGQF DA  GKT+   +P     I  V+     D+D+AVA A+ AF+ G W +M   ER R+M R ADL+E+N EELA +E  ++G  Y  +L + + M V+   Y+AGW DKI G T+P
Sbjct:  447 INGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIP 567          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
AL1A1_SHEEP1.638e-2742.58Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN2.139e-2742.58Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
ALDH1_ELEED3.648e-2743.97Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A7_RAT3.648e-2741.06Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
FTHFD_XENTR1.061e-2645.4510-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1A3_HUMAN1.811e-2640.88Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
CROM_ENTDO5.268e-2643.57Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
FTHFD_XENLA6.880e-2644.6310-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1L2_MOUSE6.880e-2643.85Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
AL1L2_HUMAN1.174e-2544.63Probable 10-formyltetrahydrofolate dehydrogenase A... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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