FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920741_ssr38 microsatellite FC920741_ssr38:38..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6366 contig Ccv1_Contig6366:69..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  205 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +++ +AA +  PI P   I   +  I+ ++ DA S KTFP   P T EVI +VAEGD  D+D A   AR AF  G PW  M   +R  ++   ADL+E++   LA+LE+ +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG
Sbjct:   11 TQYFSAAALPSPI-PNPDIPDNQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDG 159          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            ++I YTK  IN ++ D+ SGK FPV +P T E I  + EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG+
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGD 145          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTV 639
            IN +FV A  GKTF V +P T EVI +V E   +D+D AVA ARKAF+ GPW K TP  R +++ + ADL EKN + +AA+E  +NGK +  +   +VP     L YY GWADKI G  V
Sbjct:   22 INNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVV 140          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 67/146 (45.89%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  220 AAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYE-RSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            A +    + P V     K LING+FV A SGKTF V +P   +VIANVAE +  D+D AV  AR AF+     +MT  + R  +MLR AD++EKN +E+AALE+ +NGKPY  +L  +V + V    Y AG ADK++G   P  GN
Sbjct:    4 ATLARLEMAPKVTHIQEKLLINGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESF---RMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTVPPRSGN 146          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 52/137 (37.96%), Postives = 84/137 (61.31%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTI 660
            +++ +TK  IN  + ++ SG+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADL+E++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D N +
Sbjct:   27 LEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVV 163          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTI 660
            +++ +TK  IN  + +  SG+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADLIE++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D N +
Sbjct:   27 LEVKFTKIFINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVM 163          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  244 IPPV----QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            IPP     +I + K  IN QFV++ S K +PVY+P   E +  V EGD  DID+AV   + AF  G PW +M       ++ R ADL+E+++  +A+LET + GKPY  S   ++   +++L Y+AGWADK  G ++P DG+
Sbjct:    4 IPPPTRNPEIKHNKIFINNQFVNSTSNKAYPVYNPCDNEKVCEVQEGDKSDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKNS-YQDMVHCIQVLRYFAGWADKNMGESIPVDGD 144          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+AR+   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+AR+   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 56/127 (44.09%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTI 660
            IN +FV    GKTF V +P   +VI +V E   +D+D AVA AR AF EGPW ++TP ER  ++ + ADL+E++++ LAA+E+ +NGK +  +   ++   +  L YYAGWADKIHG T+  +  T+
Sbjct:   23 INNEFVKGVEGKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTMA-KVDLANSIGCLRYYAGWADKIHGQTIDTNPETL 147          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
AL1B1_BOVIN1.533e-2542.00Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
AL1A1_RABIT1.533e-2544.44Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ALDH_ALTAL2.002e-2549.17Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
ALDH2_LEITA2.614e-2545.89Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
AL1A3_MOUSE4.459e-2537.96Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A3_RAT9.935e-2538.69Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
CROM_OMMSL6.439e-2440.85Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]
BETB_BURCM1.874e-2347.11Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURA41.874e-2347.11Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
ALDH_EMENI1.874e-2344.09Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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