FC920741 | Citrus Genome Database

Overview


Name	FC920741
Unique Name	FC920741
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	688

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC920741_ssr38	microsatellite	FC920741_ssr38:38..63.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6366	contig	Ccv1_Contig6366:69..756.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G+FVDA   KT+   +P    VI  V+     D+D+AVA A++AF+ G W K+   +R R++ R ADL+E++ EELA +E  + G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 IGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIP 546

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAALET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G+FVDA   KT+   +P    VI  V+     D+D+AVA A++AF+ G W K+   +R R++ R AD++E++ EELA +E  + G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 IGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDRGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIP 546

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G+FVDA   KT+   +P    VI  V+     D+D+AVA A+ AF+ G W K++  +R R++ R ADL+E++ EELA +E  + G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 IGGEFVDAEGAKTYETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G+FVDA   KT    +P    VI  V+     D+D+AVA A+ AF+ G W K++  +R R+M R ADL+E++ EELA +E  + G  Y  +L + V M ++   Y+AGW DKI G T+P
Sbjct:  426 IGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  +T  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGAYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T +++A V +  A D+DRA+A+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAALET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

[Close]

BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1

Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I G +VDA SGKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVP 129

The following BLAST results are available for this feature:

BLAST of FC920741 vs. ExPASy Swiss-Prot

BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256


Match Name	E-value	Identity	Description
FTHFD_MOUSE	2.447e-23	41.32	10-formyltetrahydrofolate dehydrogenase OS=Mus mus...	[more]
BETB_BURS3	3.196e-23	47.11	Betaine aldehyde dehydrogenase OS=Burkholderia sp....	[more]
FTHFD_RAT	4.174e-23	40.50	10-formyltetrahydrofolate dehydrogenase OS=Rattus ...	[more]
FTHFD_PONAB	4.174e-23	41.32	10-formyltetrahydrofolate dehydrogenase OS=Pongo a...	[more]
BETB_BURCJ	5.451e-23	46.28	Betaine aldehyde dehydrogenase OS=Burkholderia cep...	[more]
BETB_BURCC	5.451e-23	46.28	Betaine aldehyde dehydrogenase OS=Burkholderia cen...	[more]
FTHFD_HUMAN	7.120e-23	42.15	10-formyltetrahydrofolate dehydrogenase OS=Homo sa...	[more]
BETB_BURVG	9.299e-23	45.45	Betaine aldehyde dehydrogenase OS=Burkholderia vie...	[more]
BETB_BURM1	1.214e-22	44.63	Betaine aldehyde dehydrogenase OS=Burkholderia mul...	[more]
BETB_BURCH	1.586e-22	45.45	Betaine aldehyde dehydrogenase OS=Burkholderia cen...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG