FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+   +  +WDVGGQ  IR  WR+YF+ T G+++VVD +D  R+ +   EL  +L E+ +R  L
Sbjct:   57 EYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDALLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.332e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.332e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 8.332e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.011e-15
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+      IWDVGG+  +R  W++Y+  T  +V+VVD S   R+ +   EL  LL E+ +R  L
Sbjct:  444 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDAL 507

HSP 2 Score: 41.5874 bits (96), Expect = 1.011e-15
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:  191 TRGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            T GLD +GKTTI+ K+  ++     PT+GFN++T+ Y+
Sbjct:  409 TLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK 446

HSP 3 Score: 30.0314 bits (66), Expect = 1.011e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            K L  A LLI ANKQD+ GAL+ + + ++
Sbjct:  501 KELRDALLLIFANKQDVAGALSVEEITEL 529
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.011e-15
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+      IWDVGG+  +R  W++Y+  T  +V+VVD S   R+ +   EL  LL E+ +R  L
Sbjct:  444 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDAL 507

HSP 2 Score: 41.5874 bits (96), Expect = 1.011e-15
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:  191 TRGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            T GLD +GKTTI+ K+  ++     PT+GFN++T+ Y+
Sbjct:  409 TLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK 446

HSP 3 Score: 30.0314 bits (66), Expect = 1.011e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            K L  A LLI ANKQD+ GAL+ + + ++
Sbjct:  501 KELRDALLLIFANKQDVAGALSVEEITEL 529
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARF3_BOVIN8.332e-1642.62ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_XENLA8.332e-1642.62ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_SCHPO8.332e-1640.63ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_RAT8.332e-1642.62ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE8.332e-1642.62ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA8.332e-1642.62ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN8.332e-1642.62ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN8.332e-1642.62ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARD1_MOUSE1.011e-1537.50GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.011e-1537.50GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]

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Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
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