FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.682e-13
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            + LN+WD+GGQR IR YWR+YFE TD L++V+D +D +R ++   EL  LL+EE +
Sbjct:   61 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 116          

HSP 2 Score: 21.557 bits (44), Expect = 9.682e-13
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDI 642
            ++LS   +LI ANKQD+
Sbjct:  114 EKLSCVPVLIFANKQDL 130          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.258e-12
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            + LN+WD+GGQR IR YWR+YFE TD L++V+D +D +R ++   EL  LL+EE +
Sbjct:   61 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 116          

HSP 2 Score: 21.1718 bits (43), Expect = 1.258e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDI 642
            ++LS   +L+ ANKQD+
Sbjct:  114 EKLSCVPVLVFANKQDL 130          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.780e-12
Identity = 20/58 (34.48%), Postives = 37/58 (63.79%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + + I+D+GG   IR  W+NY+ ++ G+++VVD SD  R+++ K  +  +L+   I G
Sbjct:   65 FEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISG 122          

HSP 2 Score: 32.7278 bits (73), Expect = 1.780e-12
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK*ELFI 322
            GLDN+GKT     I GE    ++PT+GF+   +   K E+ I
Sbjct:   28 GLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTI 69          

HSP 3 Score: 29.6462 bits (65), Expect = 1.780e-12
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  595 RLSGASLLILANKQDINGAL 654
            R+SG  +L+LANKQD  GAL
Sbjct:  119 RISGKPILVLANKQDKEGAL 138          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.635e-12
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            ++L +WDVGGQ  +R+ W  Y E TDGLV+VVD +D +RL++ + + +++LK E I+ +
Sbjct:   58 FSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV 116          

HSP 2 Score: 26.5646 bits (57), Expect = 4.635e-12
Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            + +    +++LANKQD+ GALT + + ++
Sbjct:  111 EHIKNVPVVLLANKQDMPGALTAEDITRM 139          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.647e-12
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  444 NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            N+WDVGGQ  IR  WR+YF  T GL++VVD +D  R+ + + EL  ++ +  +R  L
Sbjct:   68 NVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCL 124          

HSP 2 Score: 30.4166 bits (67), Expect = 4.647e-12
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  613 LLILANKQDINGALTPQRLLKV 678
            LL+LANKQD+ GAL+P ++  V
Sbjct:  125 LLVLANKQDLPGALSPAQITDV 146          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.217e-11
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  438 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            T  +WDVGGQ  +R  WR+Y  +TDGLV+VVD +++ RL++ K+EL  + K    +G+
Sbjct:   71 TFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGV 128          

HSP 2 Score: 25.409 bits (54), Expect = 2.217e-11
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  604 GASLLILANKQDINGALTPQRLLK 675
            G  +L+LANKQD  GAL+   + K
Sbjct:  127 GVPVLVLANKQDQPGALSAAEVEK 150          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 3.756e-11
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 3
Query:  447 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            +WD+GGQ +IR YWR YF  T  +++VVD SD  R+   K E   +L+EE ++G
Sbjct:   65 VWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKG 118          

HSP 2 Score: 28.4906 bits (62), Expect = 3.756e-11
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGAL 654
            + L GA +LI ANKQD+ GAL
Sbjct:  114 EELKGAVVLIFANKQDLPGAL 134          
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARL3_MOUSE9.682e-1351.79ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_RAT1.258e-1251.79ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
AR13B_HUMAN1.780e-1234.48ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
ARL14_HUMAN4.635e-1244.07ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARF2_SCHPO4.647e-1243.86Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARL4D_MOUSE2.217e-1144.83ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARF1_BRARP3.756e-1146.30ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
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