FC920751

Overview
NameFC920751
Unique NameFC920751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6470 contig Ccv1_Contig6470:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_PROSL (Carnitinyl-CoA dehydratase OS=Proteus sp. (strain LE138) GN=caiD PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            + L+RP+  NA+ A+    + E+F R+  D ++++ I+ G G R FCAG D+ A   G    A F +  F     +    KP ++ +NG   GGG  +++     + ++N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 IILDRPKA-NAIDAKTSHEMGEVFMRFRDDPSLRVAIITGAGERFFCAGWDLKAAAEGEAPDADFGAGGFAGLTELFDLNKPVIAAINGYAFGGGFELALAADMIICSDNASFALPEAQLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_PROMH (Carnitinyl-CoA dehydratase OS=Proteus mirabilis (strain HI4320) GN=caiD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            + L+RP+  NA+ A+    + E+F R+  D ++++ I+ G G R FCAG D+ A   G    A F +  F     +    KP ++ +NG   GGG  +++     + ++N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 IILDRPKA-NAIDAKTSHEMGEVFMRFRDDPSLRVAIITGAGERFFCAGWDLKAAAEGEAPDADFGAGGFAGLTELFDLNKPVIAAINGYAFGGGFELALAADMIICSDNASFALPEAQLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCTU (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY-LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            + +L E    V I+TLNRP+ LNAL++Q+++ +       + D ++  +I+ G  +AF AG D+  +       A  F+ +F   +  +A    P ++ + G  +GGG  +++     +A + + F  PE  LG+ P +G S    R  G
Sbjct:    4 ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMAD--LTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 151          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCBO (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium bovis GN=echA8 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY-LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            + +L E    V I+TLNRP+ LNAL++Q+++ +       + D ++  +I+ G  +AF AG D+  +       A  F+ +F   +  +A    P ++ + G  +GGG  +++     +A + + F  PE  LG+ P +G S    R  G
Sbjct:    4 ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMAD--LTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 151          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCLE (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae GN=echA8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY-LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D +L +    V I+TLNRP+ LNAL++QM++ +    +  + D +V  +++ G  + F AG D+  +       A  F  +F   +  +A    P ++ + G  +GGG  +++     +A + + F  PE  LG+ P +G S    R  G
Sbjct:    4 DTILVDGYQRVGIITLNRPQALNALNSQMMNEITNAAKELDIDPDVGAILITGSPKVFAAGADIKEMASLTFTDA--FDADFFSAWGKLAAVRTPMIAAVAGYALGGGCELAMMCDLLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 151          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 48/173 (27.75%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  171 PIRLPVFPALSSSFKMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT-YTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            P+R P F   +S        +++    + + S V ++ LNRP+ LNAL   +I  L +  + +E D  V  ++L G  +AF AG D+  +     +    +S +F+ ++   T   KP ++ +NG  +GGG  +++      A E + F  PE  LG  P  G +    R  G
Sbjct:   18 PVRCPEFRRFASGANFQYIITEK----KGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDC--YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVG 184          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALG2 (Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F S  F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALEP (Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F S  F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  258 ETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT-YTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            + S V ++ LNRP+ LNAL   +I  L +  + +E D  V  ++L G  +AF AG D+  +     +    +S +F+ ++   T   KP ++ +NG  +GGG  +++      A E + F  PE  LG  P  G +    R  G
Sbjct:   43 KNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVG 184          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: PAAF_ECOLI (Probable enoyl-CoA hydratase paaF OS=Escherichia coli (strain K12) GN=paaF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 40/139 (28.78%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  270 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            V +LTLNRP   NAL+  ++ +L+   +   TD+++ + ++ G  R F AG D+  +           ++  +   L A + KP ++ +NG  +G G  +++     VA EN+ F +PE  LG+ P  G +   +R  G
Sbjct:   12 VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQA-FNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVG 149          
The following BLAST results are available for this feature:
BLAST of FC920751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CAID_PROSL9.175e-1332.35Carnitinyl-CoA dehydratase OS=Proteus sp. (strain ... [more]
CAID_PROMH9.175e-1332.35Carnitinyl-CoA dehydratase OS=Proteus mirabilis (s... [more]
ECHA8_MYCTU2.044e-1228.00Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
ECHA8_MYCBO2.044e-1228.00Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
ECHA8_MYCLE4.553e-1228.00Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
ECHM_RAT1.014e-1127.75Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
CAID_SALG21.730e-1133.82Carnitinyl-CoA dehydratase OS=Salmonella gallinaru... [more]
CAID_SALEP1.730e-1133.82Carnitinyl-CoA dehydratase OS=Salmonella enteritid... [more]
ECHM_MOUSE2.260e-1129.86Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
PAAF_ECOLI2.951e-1128.78Probable enoyl-CoA hydratase paaF OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionC32012F02EF RVDevelop1 Citrus clementina cDNA clone C32012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920751 ID=FC920751; Name=FC920751; organism=Citrus clementina; type=EST; length=709bp
GAACTCGCGCCTGATGAGATGTCAAACGCCTTGCCCCTGCGGCCACGGTG
ACGTCTCTCAAAAAGTTGTCCATATCTCTCTTGCAAACGTTCTGAAGATG
AACCAAACCTGTCTGTAATAACTTGTGATTGGTGAATTGAATCGAGAGAG
AAGAGATCGTTTCCGCATTCCCTATTCGTCTTCCCGTTTTTCCAGCTCTA
TCAAGTTCGTTCAAGATGGCTTCCGCTCAATCACAGGAAGACCAGGTCTT
AGAAGAAGAGACCTCATTTGTAAGAATATTGACACTAAACAGGCCCAGGC
AATTGAATGCACTTTCAGCTCAAATGATTTCTCGGTTATTGGAACTTTTC
CAGCGCTATGAGACCGATTCGAACGTGAAGCTCTTAATTCTCAAGGGAAA
AGGAAGGGCATTTTGTGCTGGTGGTGATGTGGCCGCAGTTGTTCGCGGTA
TTAATGAGGGTGCCAAATTCTTTTCCAAGGAGTTCATCCTGAATTATTTG
ATGGCAACGTACACCAAACCCCAGGTTTCAATTCTTAATGGAATTGTCAT
GGGAGGTGGGGCTGGTGTTTCAATACATGGTAGATTCCGAGTTGCTACTG
AGAATTCGGTATTTGCAATGCCTGAGACAGCTTTGGGACTTTTCCCAGAT
ATTGGTGCCTCTTATTTCTTTGTCAGACTCCCTGGATTCTTCGGAGAATA
TGTTGGTCT
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