FC920751

Overview
NameFC920751
Unique NameFC920751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6470 contig Ccv1_Contig6470:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SHIFL (Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECOSM (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECOLI (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECOLC (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECOL6 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6 GN=caiD PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECOL5 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_ECO57 (Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_STAHJ (Naphthoate synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=menB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/152 (26.32%), Postives = 77/152 (50.66%), Query Frame = 3 
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++  E    +  +T+NRP   NA + + ++ +++ F R   D N+ ++IL G+G +AFC+GGD      G   G     +  +L+   L+    KP ++++ G  +GGG  +++     +A +N++F      +G F     S +  R+ G
Sbjct:   12 DEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNISVIILTGEGDKAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 163
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_STAES (Naphthoate synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=menB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/152 (26.32%), Postives = 77/152 (50.66%), Query Frame = 3 
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++  E    +  +T+NRP   NA + + ++ +++ F R   D NV +++L G+G +AFC+GGD      G   G     +  +L+   L+    KP ++++ G  +GGG  +++     +A +N++F      +G F     S +  R+ G
Sbjct:   12 DEIKYEFFEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDKAFCSGGDQKKRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 163
[Close]
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_STAEQ (Naphthoate synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/152 (26.32%), Postives = 77/152 (50.66%), Query Frame = 3 
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++  E    +  +T+NRP   NA + + ++ +++ F R   D NV +++L G+G +AFC+GGD      G   G     +  +L+   L+    KP ++++ G  +GGG  +++     +A +N++F      +G F     S +  R+ G
Sbjct:   12 DEIKYEFFEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDKAFCSGGDQKKRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 163
The following BLAST results are available for this feature:
BLAST of FC920751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CAID_SHIFL3.855e-1132.35Carnitinyl-CoA dehydratase OS=Shigella flexneri GN... [more]
CAID_ECOSM3.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOLI3.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOLC3.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOL63.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli O6 ... [more]
CAID_ECOL53.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli O6:... [more]
CAID_ECO573.855e-1132.35Carnitinyl-CoA dehydratase OS=Escherichia coli O15... [more]
MENB_STAHJ5.034e-1126.32Naphthoate synthase OS=Staphylococcus haemolyticus... [more]
MENB_STAES5.034e-1126.32Naphthoate synthase OS=Staphylococcus epidermidis ... [more]
MENB_STAEQ5.034e-1126.32Naphthoate synthase OS=Staphylococcus epidermidis ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F02EF RVDevelop1 Citrus clementina cDNA clone C32012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920751 ID=FC920751; Name=FC920751; organism=Citrus clementina; type=EST; length=709bp
GAACTCGCGCCTGATGAGATGTCAAACGCCTTGCCCCTGCGGCCACGGTG
ACGTCTCTCAAAAAGTTGTCCATATCTCTCTTGCAAACGTTCTGAAGATG
AACCAAACCTGTCTGTAATAACTTGTGATTGGTGAATTGAATCGAGAGAG
AAGAGATCGTTTCCGCATTCCCTATTCGTCTTCCCGTTTTTCCAGCTCTA
TCAAGTTCGTTCAAGATGGCTTCCGCTCAATCACAGGAAGACCAGGTCTT
AGAAGAAGAGACCTCATTTGTAAGAATATTGACACTAAACAGGCCCAGGC
AATTGAATGCACTTTCAGCTCAAATGATTTCTCGGTTATTGGAACTTTTC
CAGCGCTATGAGACCGATTCGAACGTGAAGCTCTTAATTCTCAAGGGAAA
AGGAAGGGCATTTTGTGCTGGTGGTGATGTGGCCGCAGTTGTTCGCGGTA
TTAATGAGGGTGCCAAATTCTTTTCCAAGGAGTTCATCCTGAATTATTTG
ATGGCAACGTACACCAAACCCCAGGTTTCAATTCTTAATGGAATTGTCAT
GGGAGGTGGGGCTGGTGTTTCAATACATGGTAGATTCCGAGTTGCTACTG
AGAATTCGGTATTTGCAATGCCTGAGACAGCTTTGGGACTTTTCCCAGAT
ATTGGTGCCTCTTATTTCTTTGTCAGACTCCCTGGATTCTTCGGAGAATA
TGTTGGTCT
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