FC920751

Overview
NameFC920751
Unique NameFC920751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6470 contig Ccv1_Contig6470:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALHS (Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALDC (Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain CT_02021853) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALCH (Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALA4 (Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_CITK8 (Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E+F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  +N+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_STAAW (Naphthoate synthase OS=Staphylococcus aureus (strain MW2) GN=menB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/152 (26.97%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++  E    +  +T+NRP   NA + + +S +++ F R   D NV +++L G+G  AFC+GGD      G   G     +  +L+   L+    KP ++++ G  +GGG  +++     +A +N++F      +G F     S +  R+ G
Sbjct:   13 DEIKYEFYEGIAKVTINRPEVRNAFTPKTVSEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 164          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_STAAS (Naphthoate synthase OS=Staphylococcus aureus (strain MSSA476) GN=menB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/152 (26.97%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++  E    +  +T+NRP   NA + + +S +++ F R   D NV +++L G+G  AFC+GGD      G   G     +  +L+   L+    KP ++++ G  +GGG  +++     +A +N++F      +G F     S +  R+ G
Sbjct:   13 DEIKYEFYEGIAKVTINRPEVRNAFTPKTVSEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 164          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: MENB_BACSU (Naphthoate synthase OS=Bacillus subtilis GN=menB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 42/152 (27.63%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  240 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNY--LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            D++L E  + +  +T+NRP   NA + + ++ +++ F     D NV +++L G G +AFC+GGD      G   G     +  +L+   L+    KP V++++G  +GGG  + I     +A +N++F      +G F     S +  R+ G
Sbjct:   11 DEILYETYNGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVG 162          
The following BLAST results are available for this feature:
BLAST of FC920751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CAID_SALHS6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella heidelber... [more]
CAID_SALDC6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella dublin (s... [more]
CAID_SALCH6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella choleraes... [more]
CAID_SALA46.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella agona (st... [more]
CAID_CITK86.575e-1132.35Carnitinyl-CoA dehydratase OS=Citrobacter koseri (... [more]
MENB_STAAW8.587e-1126.97Naphthoate synthase OS=Staphylococcus aureus (stra... [more]
MENB_STAAS8.587e-1126.97Naphthoate synthase OS=Staphylococcus aureus (stra... [more]
MENB_BACSU8.587e-1127.63Naphthoate synthase OS=Bacillus subtilis GN=menB P... [more]

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Properties
Property NameValue
Genbank descriptionC32012F02EF RVDevelop1 Citrus clementina cDNA clone C32012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920751 ID=FC920751; Name=FC920751; organism=Citrus clementina; type=EST; length=709bp
GAACTCGCGCCTGATGAGATGTCAAACGCCTTGCCCCTGCGGCCACGGTG
ACGTCTCTCAAAAAGTTGTCCATATCTCTCTTGCAAACGTTCTGAAGATG
AACCAAACCTGTCTGTAATAACTTGTGATTGGTGAATTGAATCGAGAGAG
AAGAGATCGTTTCCGCATTCCCTATTCGTCTTCCCGTTTTTCCAGCTCTA
TCAAGTTCGTTCAAGATGGCTTCCGCTCAATCACAGGAAGACCAGGTCTT
AGAAGAAGAGACCTCATTTGTAAGAATATTGACACTAAACAGGCCCAGGC
AATTGAATGCACTTTCAGCTCAAATGATTTCTCGGTTATTGGAACTTTTC
CAGCGCTATGAGACCGATTCGAACGTGAAGCTCTTAATTCTCAAGGGAAA
AGGAAGGGCATTTTGTGCTGGTGGTGATGTGGCCGCAGTTGTTCGCGGTA
TTAATGAGGGTGCCAAATTCTTTTCCAAGGAGTTCATCCTGAATTATTTG
ATGGCAACGTACACCAAACCCCAGGTTTCAATTCTTAATGGAATTGTCAT
GGGAGGTGGGGCTGGTGTTTCAATACATGGTAGATTCCGAGTTGCTACTG
AGAATTCGGTATTTGCAATGCCTGAGACAGCTTTGGGACTTTTCCCAGAT
ATTGGTGCCTCTTATTTCTTTGTCAGACTCCCTGGATTCTTCGGAGAATA
TGTTGGTCT
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