FC920752

Overview
NameFC920752
Unique NameFC920752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_BACAC (60 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groL PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 89/155 (57.42%), Postives = 120/155 (77.42%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            AKDI F + +R +M  G+D L++AV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ L++GI+K V   VEEL+  ++PIEG+  I  VA ISA ++++
Sbjct:    2 AKDIKFSEEARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAISAADEEV 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_BACAA (60 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groL PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 89/155 (57.42%), Postives = 120/155 (77.42%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            AKDI F + +R +M  G+D L++AV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ L++GI+K V   VEEL+  ++PIEG+  I  VA ISA ++++
Sbjct:    2 AKDIKFSEEARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAISAADEEV 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 88/157 (56.05%), Postives = 121/157 (77.07%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK I +++ +R A++ G+D L+++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G +LIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK    LVE++ + AR IE    I  V  ISAGND+ +G
Sbjct:    2 AKRIIYNENARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAISAGNDEEVG 158          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 87/164 (53.05%), Postives = 130/164 (79.27%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            +K I+F   SR +++AGI+ L+DAV +TLGP+GRNV+L+ ++G+P++VNDG+T+A+ IEL++P ENAGA LI+EVASKT + AGDGTTTA+++A+ +++ GL +V +GANPV+L+RGI+K    LV+E+E  A+P+EG   I  VAT+S+GND  +G    DA+
Sbjct:    2 SKLISFKDESRRSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVEG-SAIAQVATVSSGNDPEVGAMIADAM 164          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 88/164 (53.66%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN +SLK+GIDK    LV ++E+ A+PI   + I    TI+AGND+ +G    DA+
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 86/164 (52.44%), Postives = 126/164 (76.83%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV++++++A+PI   + I    TI+AGND+ +G    DA+
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATDFLVKKIQEQAKPISDSNAIAQCGTIAAGNDEEVGQMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 89/164 (54.27%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FGSP+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV +++  A+PI   + I  V TISAGND+ +G    DA+
Sbjct:    2 AKRIIYNENARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGSPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVGKIKDMAKPIADSNAIAQVGTISAGNDEEVGKMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 88/164 (53.66%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN +SLK+GIDK    LV ++E+ A+PI   + I    TI+AGND+ +G    DA+
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.042e-42
Identity = 89/165 (53.94%), Postives = 124/165 (75.15%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            +AK + +   +RA ++AG+DKL++AV +TLGPRGR V+L++ +GSP V  DGV++A+ IEL DP EN  A L++EVASKT D AGDGTTTA+VL + I + GL ++ SGANP+ +KRGID+ V  +VEEL+K ++P+ GR +I+ VATISA ND  IG    DA+
Sbjct:    2 AAKKLVYGDEARAKLKAGVDKLANAVKVTLGPRGREVILEKKWGSPVVTKDGVSVAKEIELTDPYENMAAQLVKEVASKTADVAGDGTTTATVLTQAIYEEGLKAIASGANPIYVKRGIDEAVKIIVEELKKISKPVTGRKEIEQVATISANNDPEIGKIIADAM 166          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.042e-42
Identity = 89/155 (57.42%), Postives = 120/155 (77.42%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            AKDI F + +R AM  G+D L+DAV +T+GP+GRNVVL+ +FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTN+ AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL   A+PIEG++ I  VA ISA ++++
Sbjct:    2 AKDILFSEEARRAMLRGVDALADAVKVTIGPKGRNVVLERKFGSPLITNDGVTIAKEIELEDHFENMGAKLVAEVASKTNEIAGDGTTTATVLAQAMIREGLKNVTAGANPMVIRKGIEKAVRRAVEELHAIAKPIEGKEAIAQVAAISAADEEV 156          
The following BLAST results are available for this feature:
BLAST of FC920752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACAC1.564e-4257.4260 kDa chaperonin OS=Bacillus anthracis (strain CD... [more]
CH60_BACAA1.564e-4257.4260 kDa chaperonin OS=Bacillus anthracis (strain A0... [more]
CH602_TRIEI1.564e-4256.0560 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNY31.564e-4253.0560 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_PROMM1.564e-4253.6660 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROMA1.564e-4252.4460 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH601_SYNS91.564e-4254.2760 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_PROM31.564e-4253.6660 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_SULSY2.042e-4253.9460 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_EXIS22.042e-4257.4260 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012F03EF RVDevelop1 Citrus clementina cDNA clone C32012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920752 ID=FC920752; Name=FC920752; organism=Citrus clementina; type=EST; length=738bp
CTACTTGTTGTTGTCACCTTATCCGAAACAATTTCCCTCAGCAGACGCTT
TACTCCGTTTGGTTGATTGTTCGACATGGCTTCTGCTAACGCCCTTTCTT
CGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGA
AATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGC
GTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGG
CCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGA
GGGAGAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGA
TGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATG
CTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACCCTGCT
GGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACT
AGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAG
GGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCC
AGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGC
TGGGAATGATGACCTGATTGGGACATGATCGCCCGATGCATTGACAAGTT
GGTCCTGATGGCGTCTTGTCATCGAGTCACATCATCAT
back to top