FC920752

Overview
NameFC920752
Unique NameFC920752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 84/157 (53.50%), Postives = 117/157 (74.52%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK+I F   +R  + +G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ IEL D +EN GA L+REVASKTND AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK V  +  EL+  A+ ++G+ +I  VATISA +D  IG
Sbjct:    2 AKEIIFADDARNRLYSGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEIELKDTIENMGAGLVREVASKTNDEAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKFVEAVTSELKSAAKKVDGKKEIAQVATISANSDSSIG 158          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 86/155 (55.48%), Postives = 121/155 (78.06%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            AK+I F + +R AM  G+D L+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV +++G+++ V   +E L++ ++PIEG++ I  VA ISA ++++
Sbjct:    2 AKEIKFSEEARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAADEEV 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_HAHCH (60 kDa chaperonin OS=Hahella chejuensis (strain KCTC 2396) GN=groL PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.324e-41
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNVVLD+ FG+P V  DGV++A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  GL SV +G NP+ LKRGIDK V   V+E++  +RP E    I  V TISA +D+ IG    +A+
Sbjct:    2 AAKDVKFGDSARKRMVAGVNTLADAVKVTLGPKGRNVVLDKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAILNEGLKSVAAGMNPMDLKRGIDKAVIAAVKEIKNISRPCEDSKSIAQVGTISANSDERIGNIIAEAM 166          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.324e-41
Identity = 88/155 (56.77%), Postives = 120/155 (77.42%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            AKDI F + +R AM  G+D L+DAV +T+GP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTN+ AGDGTTTA+VLA+ +I+ GL +VT+GANP+ L++GIDK V   +EEL+  ++PIE ++ I  VA ISA ++++
Sbjct:    2 AKDIKFSEDARHAMLRGVDALADAVKVTIGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDRFENMGAKLVAEVASKTNEVAGDGTTTATVLAQAMIREGLKNVTAGANPMILRKGIDKAVTRALEELKAISKPIESKEAIAQVAAISAADEEV 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 85/154 (55.19%), Postives = 121/154 (78.57%), Query Frame = 1
Query:  208 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA + ++
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISANSAEI 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 85/154 (55.19%), Postives = 121/154 (78.57%), Query Frame = 1
Query:  208 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA + ++
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISANSAEI 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 85/154 (55.19%), Postives = 121/154 (78.57%), Query Frame = 1
Query:  208 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA + ++
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISANSAEI 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F + +R  +  G+D L+DAV +TLGP+GRNVV+D+ FG+P++  DGVT+A+ IEL D  EN GA L+REVASKTND AGDGTTTA+VLA+ I++ GL SV +G NP+ LKRGID  V  +VE L+ R++P+ G +++  V  ISA  D  +G
Sbjct:    2 AAKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELKDKFENIGAQLVREVASKTNDLAGDGTTTATVLAQAIVREGLKSVAAGMNPMDLKRGIDLAVTKVVENLKARSKPVAGSNEVAQVGIISANGDKEVG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_PHATR (60 kDa chaperonin, chloroplastic OS=Phaeodactylum tricornutum GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 86/165 (52.12%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDALT 696
            AK I +   +R A++ G++ + +AV +TLGP+GRNVVL++ +GSP++VNDGVTIA+ I+L D +EN G +LIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GANP+S+K G++K    LV ++ + A+P+E    I+ VA+ISAGND++IG+   DAL+
Sbjct:    2 AKKILYQDNARRALERGMEIMVEAVSVTLGPKGRNVVLEKSYGSPQIVNDGVTIAKEIKLLDHIENTGVSLIRQAASKTNDVAGDGTTTATVLAYAMVKEGLKNVAAGANPISIKLGMEKASQYLVTQINEFAQPVEDIQSIQQVASISAGNDEIIGSLIADALS 166          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_HAES2 (60 kDa chaperonin OS=Haemophilus somnus (strain 2336) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNV+LD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V+ +VEEL+  ++P E   +I+ V TISA  D+ +G
Sbjct:    2 TAKDVKFGNDARVKMLAGVNVLADAVKVTLGPKGRNVILDKAFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVSEGLKAVAAGMNPMDLKRGIDKAVNAVVEELKILSKPCETSKEIEQVGTISANADETVG 159          
The following BLAST results are available for this feature:
BLAST of FC920752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMFF1.013e-4153.5060 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_BACSU1.013e-4155.4860 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]
CH60_HAHCH1.324e-4153.9460 kDa chaperonin OS=Hahella chejuensis (strain KC... [more]
CH60_EXISA1.324e-4156.7760 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_THESQ1.729e-4155.1960 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP11.729e-4155.1960 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA1.729e-4155.1960 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_SPHWW1.729e-4153.8060 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_PHATR1.729e-4152.1260 kDa chaperonin, chloroplastic OS=Phaeodactylum ... [more]
CH60_HAES21.729e-4153.8060 kDa chaperonin OS=Haemophilus somnus (strain 23... [more]

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Properties
Property NameValue
Genbank descriptionC32012F03EF RVDevelop1 Citrus clementina cDNA clone C32012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920752 ID=FC920752; Name=FC920752; organism=Citrus clementina; type=EST; length=738bp
CTACTTGTTGTTGTCACCTTATCCGAAACAATTTCCCTCAGCAGACGCTT
TACTCCGTTTGGTTGATTGTTCGACATGGCTTCTGCTAACGCCCTTTCTT
CGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGA
AATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGC
GTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGG
CCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGA
GGGAGAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGA
TGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATG
CTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACCCTGCT
GGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACT
AGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAG
GGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCC
AGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGC
TGGGAATGATGACCTGATTGGGACATGATCGCCCGATGCATTGACAAGTT
GGTCCTGATGGCGTCTTGTCATCGAGTCACATCATCAT
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