FC920752

Overview
NameFC920752
Unique NameFC920752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMJJ (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 84/164 (51.22%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG    DA+
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMJE (60 kDa chaperonin OS=Campylobacter jejuni GN=groL PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 84/164 (51.22%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG    DA+
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMJD (60 kDa chaperonin OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 84/164 (51.22%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG    DA+
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMJ8 (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 84/164 (51.22%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG    DA+
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 84/164 (51.22%), Postives = 121/164 (73.78%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AKDI F   +R  +  G+ KL+D V +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GAAL++EVA+KTND AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K ++P++ + +I  VATISA +D+ IG    DA+
Sbjct:    2 AKDIIFSDDARNRLYDGVKKLNDTVKVTMGPRGRNVLIQKSFGAPAITKDGVSVAKEVELKDTIENMGAALVKEVANKTNDQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKICADVVAELKKISKPVKDKKEIAQVATISANSDESIGKLIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_PROMS (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain AS9601) GN=groL2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 83/157 (52.87%), Postives = 121/157 (77.07%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ ++PI   + I    TI+AGND+ +G
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIQENSKPISDSNAIAQCGTIAAGNDEEVG 158          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.949e-41
Identity = 85/158 (53.80%), Postives = 116/158 (73.42%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +V EL+  ++P E   +I+ V TISA +D ++G
Sbjct:    2 AAKDVKFGNDARVKMLAGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAVVTELKALSKPCETSKEIEQVGTISANSDSIVG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.949e-41
Identity = 87/165 (52.73%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AKDI F+  +R  ++ G+D+L+DAV +TLGP+GRNV++D+ FG+P++  DGVT+A+ IEL+D  +N GA L++EVASKTND AGDGTTTA+VLA+ II +G+ +V +GANP+ LKRGIDK V  +VE L+K++R + +    I+ VA ISA  D+ IG+   +A+
Sbjct:    2 AKDIKFNLDARDLLKKGVDELADAVKVTLGPKGRNVIIDKKFGAPQITKDGVTVAKEIELSDHFQNMGAQLVKEVASKTNDNAGDGTTTATVLAQSIINVGMKNVAAGANPMDLKRGIDKAVAKVVESLKKQSRAVGDDFGKIENVAKISANGDETIGSLIAEAM 166          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.949e-41
Identity = 84/158 (53.16%), Postives = 116/158 (73.42%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNV+LD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +V EL+  ++P E   +I+ V TISA +D ++G
Sbjct:    2 AAKDVKFGNDARVKMLAGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAVVSELKALSKPCETSKEIEQVGTISANSDSIVG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 86/153 (56.21%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGND 660
            AKDI F   +RAAM  G+D L+D V +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VL + I++ GL +VT+GANP+ ++RGI+K     VEEL+  A+P+ G++ I  VA +S+ ++
Sbjct:    2 AKDIKFSADARAAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEKATSAAVEELKAIAQPVSGKEAIAQVAAVSSRSE 154          
The following BLAST results are available for this feature:
BLAST of FC920752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMJJ2.258e-4151.2260 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]
CH60_CAMJE2.258e-4151.2260 kDa chaperonin OS=Campylobacter jejuni GN=groL ... [more]
CH60_CAMJD2.258e-4151.2260 kDa chaperonin OS=Campylobacter jejuni subsp. d... [more]
CH60_CAMJ82.258e-4151.2260 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]
CH60_CAMHC2.258e-4151.2260 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH602_PROMS2.258e-4152.8760 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_MANSM2.949e-4153.8060 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_AZOPC2.949e-4152.7360 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
CH60_ACTSZ2.949e-4153.1660 kDa chaperonin OS=Actinobacillus succinogenes (... [more]
CH60_STRU03.851e-4156.2160 kDa chaperonin OS=Streptococcus uberis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F03EF RVDevelop1 Citrus clementina cDNA clone C32012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920752 ID=FC920752; Name=FC920752; organism=Citrus clementina; type=EST; length=738bp
CTACTTGTTGTTGTCACCTTATCCGAAACAATTTCCCTCAGCAGACGCTT
TACTCCGTTTGGTTGATTGTTCGACATGGCTTCTGCTAACGCCCTTTCTT
CGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGA
AATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGC
GTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGG
CCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGA
GGGAGAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGA
TGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATG
CTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACCCTGCT
GGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACT
AGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAG
GGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCC
AGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGC
TGGGAATGATGACCTGATTGGGACATGATCGCCCGATGCATTGACAAGTT
GGTCCTGATGGCGTCTTGTCATCGAGTCACATCATCAT
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