FC920752

Overview
NameFC920752
Unique NameFC920752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK I FDQ  R A   G++ L+DAV +TLGP+GRNVV+++ FG+P +  DGVT+A+ IEL D  EN GA L++EVASKT+D AGDGTTTA+VLA+ I + G   V +G NP+ +KRGIDK V  LV EL+  ++PI+   +I  V TISA ND  IG
Sbjct:    2 AKVIKFDQEGRNAFLKGVNTLADAVKVTLGPKGRNVVIEKSFGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGIDKAVETLVAELKSISKPIKDHKEIAQVGTISANNDKTIG 158          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 82/167 (49.10%), Postives = 119/167 (71.26%), Query Frame = 1
Query:  196 RASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            RA AKD+ F   +RA M  G+D L+DAV +T+GP+GR V++++ +GSPKV  DGVT+A+AI+L D  +N GA L+++VA+ TN+ AGDGTTTA+VLAR I K G   ++ GANPV ++RG+   V  ++ EL+K+++P+   ++I  VATISA  D  IG    DA+
Sbjct:   24 RAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKAIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAM 190          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 85/165 (51.52%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG+P V  DGV++A+ IEL D ++N GA +++EVASKT+D AGDGTTTA+VLA+ I+  G+  V +G NP+ LKRGIDK VH LVEEL+K ++      +I  V +ISA +D+ IG    DA+
Sbjct:    2 AAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVHEGMKYVAAGMNPMDLKRGIDKAVHALVEELKKASKATTTSKEIAQVGSISANSDETIGKIIADAM 166          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 82/157 (52.23%), Postives = 121/157 (77.07%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK ++F   SR +++ G++ L+DAV +T+GPRGRNVVL++ +GSP +VNDG TIA+ IELADP EN GA LI++VASKT D AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V  L +R++ + G D I+ VAT+S+G D+ +G
Sbjct:    2 AKLLSFSNESRESLERGMNALADAVRVTIGPRGRNVVLEKSYGSPDIVNDGDTIAKEIELADPFENIGAKLIQQVASKTKDKAGDGTTTATVLAQAMVEEGLRNTAAGASPIELRRGMEKAVAAVVASLNQRSQSVSG-DAIRQVATVSSGGDEEVG 157          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 84/157 (53.50%), Postives = 121/157 (77.07%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            AK + F   SRAA++ G++ L+DAV +T+GPRGRNVVL++ FG+P +VNDG TIA+ I+L DP EN GA LI++VASKT D AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V+ L +R++ + G D I+ VAT+SAG DD +G
Sbjct:    2 AKLLKFSDESRAALERGMNALADAVRVTIGPRGRNVVLEKSFGAPDIVNDGDTIAKEIDLEDPFENIGAKLIQQVASKTKDKAGDGTTTATVLAQAMVEEGLRNTAAGASPIELRRGMEKAVALIVKGLGERSQSVSG-DAIRQVATVSAGGDDEVG 157          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M  G+D L++AV +TLGP+GRNVV+++ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKT D AGDGTTTA+VLA+ I+K G  SV +G NP+ LKRGID  V  +V++L+  A+ I   D+I  V TISA  D  IG
Sbjct:    2 AAKDVKFSTDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTADLAGDGTTTATVLAQAIVKEGAKSVAAGMNPMDLKRGIDLAVEAIVKDLKAHAKKITSNDEIAQVGTISANGDSEIG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.113e-39
Identity = 79/154 (51.30%), Postives = 118/154 (76.62%), Query Frame = 1
Query:  208 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDL 666
            K + FD+ +R +++ G++K++DAV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +I+ GL +V +G+NP+ LKRGIDK      + ++ +A+ + GR+DI  VA ISA + ++
Sbjct:    3 KLLRFDEEARRSLEKGVNKVADAVRITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQSMIREGLKNVAAGSNPILLKRGIDKATEKAAKYIKDKAKKLSGREDIAHVAAISANSSEI 156          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SALTY (60 kDa chaperonin OS=Salmonella typhimurium GN=groL PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.113e-39
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SALTI (60 kDa chaperonin OS=Salmonella typhi GN=groL PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.113e-39
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SALSV (60 kDa chaperonin OS=Salmonella schwarzengrund (strain CVM19633) GN=groL PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.113e-39
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVG 159          
The following BLAST results are available for this feature:
BLAST of FC920752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GEOSF1.618e-3954.7860 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH60_CRIGR1.618e-3949.1060 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH602_POLNA1.618e-3951.5260 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH601_SYNS31.618e-3952.2360 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_SYNPW1.618e-3953.5060 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_BRASO1.618e-3953.1660 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_THELT2.113e-3951.3060 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_SALTY2.113e-3953.8060 kDa chaperonin OS=Salmonella typhimurium GN=gro... [more]
CH60_SALTI2.113e-3953.8060 kDa chaperonin OS=Salmonella typhi GN=groL PE=3... [more]
CH60_SALSV2.113e-3953.8060 kDa chaperonin OS=Salmonella schwarzengrund (st... [more]

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Properties
Property NameValue
Genbank descriptionC32012F03EF RVDevelop1 Citrus clementina cDNA clone C32012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920752 ID=FC920752; Name=FC920752; organism=Citrus clementina; type=EST; length=738bp
CTACTTGTTGTTGTCACCTTATCCGAAACAATTTCCCTCAGCAGACGCTT
TACTCCGTTTGGTTGATTGTTCGACATGGCTTCTGCTAACGCCCTTTCTT
CGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGA
AATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGC
GTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGG
CCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGA
GGGAGAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGA
TGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATG
CTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACCCTGCT
GGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACT
AGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAG
GGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCC
AGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGC
TGGGAATGATGACCTGATTGGGACATGATCGCCCGATGCATTGACAAGTT
GGTCCTGATGGCGTCTTGTCATCGAGTCACATCATCAT
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