FC920752

Overview
NameFC920752
Unique NameFC920752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6017 contig Ccv1_Contig6017:97..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 86/164 (52.44%), Postives = 122/164 (74.39%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I FD  +RA +++G+D +++AV +TLGP+GRNVV+D+ +G+P +  DG+++A+ IEL DP+EN GA LI+EVASKT D AGDGTTTA+VLA+ I   G+ +V +GANP+ LKRG+DK +  +VE L++ +R I    +I+ VATISA ND  IG    DA+
Sbjct:    2 AKHIIFDSEARAKLKSGVDTMANAVKVTLGPKGRNVVIDKKYGAPSITKDGISVAKEIELKDPVENLGAQLIKEVASKTADGAGDGTTTATVLAQSIFSAGIKNVAAGANPMDLKRGVDKAIEAVVERLKQNSRKISNSKEIEQVATISANNDSKIGKMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 89/164 (54.27%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ A+PI   + I  V TISAGND+ +G    DA+
Sbjct:    2 AKRIIYNENARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVGKIQENAKPIADSNAIAQVGTISAGNDEEVGKMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 89/164 (54.27%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV E++ +A PI   + I  V TISAGND+ +G    DA+
Sbjct:    2 AKRIIYNENARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVAEIKDKANPISDSNAIAQVGTISAGNDEEVGRMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_SALRD (60 kDa chaperonin 2 OS=Salinibacter ruber (strain DSM 13855) GN=groL2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 88/163 (53.99%), Postives = 119/163 (73.01%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDA 690
            AK I FD  +R+A+Q G+D+++ AV +TLGP+GRNVVL++ FG+P +  DGVT+A+ IEL + + N GA +++E ASKTND AGDGTTTA+VLA+ +I  G+ SVTSGANP+ +KRGI      +V  L  ++ P+EG+D I  VATISA NDD IG    DA
Sbjct:    2 AKQIKFDSDARSALQEGVDQMAKAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEERLPNIGAQVLKEAASKTNDDAGDGTTTATVLAQSVINAGMKSVTSGANPMDVKRGITAAAEEVVTHLRNQSDPVEGKDRISQVATISANNDDAIGDLIADA 164          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 88/164 (53.66%), Postives = 126/164 (76.83%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV +++++A+PI   + I  V TISAGND+ +G    DA+
Sbjct:    2 AKRIIYNENARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEQAKPIADSNAIAQVGTISAGNDEEVGKMIADAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 89/158 (56.33%), Postives = 124/158 (78.48%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDD-IKAVATISAGNDDLIG 672
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNVVL + FG P+V  DGV++A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  +V +L+K++R + G ++ IK VA+ISA ND+ IG
Sbjct:    2 AKNIQFDIEARDKLKKGVDALANAVKVTLGPKGRNVVLQKSFGGPQVTKDGVSVAKEIELEDPIENLGAQMVKEVASKTNDIAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAVVNDLKKQSREVGGSNEKIKQVASISANNDEAIG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 88/158 (55.70%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIG 672
            AKDI FD  +R  ++ G+D L++AV +TLGP+GRNV++ + FG+P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  L  +L K+ + + +  + IK VA+ISA NDD+IG
Sbjct:    2 AKDIKFDIQARNGIKRGVDALANAVKVTLGPKGRNVIISKSFGAPTVTKDGVTVAKEIELEDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVQEGLKNVAAGANPMDLKRGIDKAVEALTADLAKQTKEVGDSSEKIKQVASISANNDDMIG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 92/165 (55.76%), Postives = 125/165 (75.76%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            +AK IAFD+ +R+ +  G+ KLS AV  TLGP+GR VVL+ +FGSP + NDGVTIA+ I+L DP EN GA L +EVASKTND AGDGTTTA+VLA  +++ G+ +VT+GANP++L+RGI+K V  + EE++K +RP+ G+ DI  VATISA  D  IG+   +A+
Sbjct:    2 AAKLIAFDEEARSKLLTGVLKLSKAVKATLGPKGRYVVLERKFGSPLITNDGVTIAKEIDLEDPYENLGAQLAKEVASKTNDVAGDGTTTATVLAEAMVREGMKNVTAGANPIALRRGIEKAVEAVTEEIKKLSRPVSGKRDITEVATISA-KDQQIGSIIAEAM 165          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH60_CHLTE (60 kDa chaperonin OS=Chlorobium tepidum GN=groL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 89/158 (56.33%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  202 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 672
            +AKDI FD  +R  ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL DP+EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +VT+GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG
Sbjct:    2 TAKDILFDAEARTKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELVDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIG 159          
BLAST of FC920752 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 89/164 (54.27%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  205 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDPAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGT*SPDAL 693
            AK I +++ +R A++ GID L +AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ A+PI   + I  V TISAGND+ +G    DA+
Sbjct:    2 AKRIIYNENARRALEKGIDILCEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEMAKPIADSNAIAQVGTISAGNDEEVGKMIADAM 165          
The following BLAST results are available for this feature:
BLAST of FC920752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AMOA55.374e-4352.4460 kDa chaperonin OS=Amoebophilus asiaticus (strai... [more]
CH602_SYNS35.374e-4354.2760 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SYNPW5.374e-4354.2760 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_SALRD5.374e-4353.9960 kDa chaperonin 2 OS=Salinibacter ruber (strain ... [more]
CH601_SYNPX7.019e-4353.6660 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_SULMW9.167e-4356.3360 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_GRAFK9.167e-4355.7060 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_COPPD9.167e-4355.7660 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_CHLTE9.167e-4356.3360 kDa chaperonin OS=Chlorobium tepidum GN=groL PE... [more]
CH602_SYNSC9.167e-4354.2760 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC32012F03EF RVDevelop1 Citrus clementina cDNA clone C32012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920752 ID=FC920752; Name=FC920752; organism=Citrus clementina; type=EST; length=738bp
CTACTTGTTGTTGTCACCTTATCCGAAACAATTTCCCTCAGCAGACGCTT
TACTCCGTTTGGTTGATTGTTCGACATGGCTTCTGCTAACGCCCTTTCTT
CGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGA
AATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGC
GTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGG
CCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGA
GGGAGAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGA
TGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATG
CTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACCCTGCT
GGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACT
AGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAG
GGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCC
AGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGC
TGGGAATGATGACCTGATTGGGACATGATCGCCCGATGCATTGACAAGTT
GGTCCTGATGGCGTCTTGTCATCGAGTCACATCATCAT
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