FC920757

Overview
NameFC920757
Unique NameFC920757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:708..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.187e-72
Identity = 141/216 (65.28%), Postives = 167/216 (77.31%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFGEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.327e-72
Identity = 139/216 (64.35%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL+   + E    +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCNGSEEEKTLYLTPEQEKDKSHFIDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.544e-71
Identity = 138/216 (63.89%), Postives = 167/216 (77.31%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLD  RYVL+   + E    +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDTMRYVLRCNGSEEEKTLYLTPEQEKDKSHFIDKETGQEHELIESMPLLEWFANSYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.919e-70
Identity = 133/221 (60.18%), Postives = 167/221 (75.57%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEALAVL 665
            ARLRMEK HNYVRK +ELATQFY+     +PNVSGL+LAGSADFKTEL  SDMFD RL+ KI+K+VDVSYGG+NGFNQAIELS E LS+VKFIQEK+LI ++FEEI+QDTGKY FG  DTLKALD+GA  TLIVWE+L+  RY+L+   TGE  +  LN++Q  + + F+D  +  + E+ E+  ++EWFAN Y+ FG +LEFVTN  +    F +    L
Sbjct:  193 ARLRMEKRHNYVRKVSELATQFYVT--NDKPNVSGLILAGSADFKTELGTSDMFDQRLREKIIKIVDVSYGGDNGFNQAIELSGEVLSSVKFIQEKKLISQFFEEIAQDTGKYCFGIADTLKALDLGAAHTLIVWESLETIRYLLR-LPTGEEKVIFLNKDQNKDASVFKDKESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGL 410          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.806e-69
Identity = 121/214 (56.54%), Postives = 161/214 (75.23%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLRMEK HNY+RK AE AT  ++     Q NV+ L+LAGSADFK EL+QSD+FD RL +KILK+VDVSYGG+NGFNQAIELS+++L NVKF+QEK+LI K+F+E++QDTGKYV+G ++TL+AL+MGA++ LIVWENL+  R V+KN  TGE  +   +  ++ +++ F+D  T AEL+V E   L EW  N Y+ +G  LEFVTN  +    F
Sbjct:  187 ARLRMEKRHNYLRKVAETATTMFIT--NDQVNVAALILAGSADFKNELAQSDIFDQRLASKILKIVDVSYGGDNGFNQAIELSSDALQNVKFVQEKKLITKFFDEVAQDTGKYVYGINETLQALEMGAIELLIVWENLETKRMVVKNPSTGEEKVFLNSPTEQHDESKFKDPETGAELDVIEILPLTEWLVNTYQNYGAQLEFVTNKSQEGNQF 398          

HSP 2 Score: 38.891 bits (89), Expect = 1.806e-69
Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEG+QF +GFGG GGILRY +
Sbjct:  391 KSQEGNQFQKGFGGFGGILRYKV 413          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.296e-67
Identity = 127/216 (58.80%), Postives = 162/216 (75.00%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR EK HNYVRK AELA Q ++     + NV G+VLAGSADFK +L+ SDMFD RL  K++KVVDVSYGGENGFNQAIEL++E+L NVKFIQEK+LIGKYFEEISQDTG+  +G +DTLKAL++GAV+TLIV+ENL++TR+VLK++   EI+I    ++   N++ F D  T  E+EV  + S LEW A  Y+ FG TLEFV++       F +
Sbjct:  192 ARLREEKRHNYVRKVAELAVQNFIT--NDKVNVMGIVLAGSADFKNDLNASDMFDQRLATKVIKVVDVSYGGENGFNQAIELASETLGNVKFIQEKKLIGKYFEEISQDTGRICYGVEDTLKALELGAVETLIVFENLEVTRWVLKDSNGAEIIIHSTKQQDAANRDRFMDKETGQEMEVVSQESFLEWIAEHYKDFGTTLEFVSDRSTEGNQFVK 405          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.330e-65
Identity = 118/215 (54.88%), Postives = 155/215 (72.09%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFR-DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLR EK HNYVRK AE+A Q ++     + NV GL+LAGSADFKT+L++S++FDPRL  K++ +VDVSYGGENGFNQAIELSAE+L+NVK++QEK+L+  YF+EISQDTGK+ +G DDTLKALD+GAV+ LIV+ENL+  RY  K+    E++      E E    +F  D AT  E++V  +  L+EW A  Y+ FG TLEF+T+       F
Sbjct:  188 ARLREEKRHNYVRKVAEVAVQNFIT--NDKVNVKGLILAGSADFKTDLAKSELFDPRLACKVISIVDVSYGGENGFNQAIELSAEALANVKYVQEKKLLEAYFDEISQDTGKFCYGIDDTLKALDLGAVEKLIVFENLETIRYTFKDAEDNEVI---KFAEPEAKDKSFAIDKATGQEMDVVSEEPLIEWLAANYKNFGATLEFITDKSSEGAQF 397          

HSP 2 Score: 34.6538 bits (78), Expect = 3.330e-65
Identity = 14/23 (60.87%), Postives = 18/23 (78.26%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +S EG+QF  GFGGIG +LRY +
Sbjct:  390 KSSEGAQFVTGFGGIGAMLRYKV 412          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.545e-58
Identity = 111/216 (51.39%), Postives = 154/216 (71.30%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR EK HNY+RK AELA Q ++     +PNV+G+VLAG+A FK EL+++DM D RL   I  VVDVSYGGENG N+AI L+AE+L+NVKF+ EK+L+ K+FEEI+ DTG  VFG DDT+KAL++GAV+T++++E LDI RYVLKN V G+    +LN  Q+ +   F+D  T  +L+V  + SL EW  + Y+ +G  +EF+T+  +    F +
Sbjct:  196 ARLREEKRHNYLRKVAELANQNFIT--NDRPNVTGIVLAGNAAFKNELAETDMLDKRLLPVICAVVDVSYGGENGLNEAITLAAEALTNVKFVAEKKLVSKFFEEIALDTGMIVFGVDDTMKALELGAVETVLLFEELDINRYVLKNPVKGDTKTIYLNSTQQKDSKYFKDRETGMDLDVVSEDSLAEWLCHNYQNYGAQVEFITDKSQEGFQFVK 409          
The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ERF1_HUMAN1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB4.187e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR9.327e-7264.35Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA3.544e-7163.89Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI3.919e-7060.18Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO1.806e-6956.54Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN5.296e-6758.80Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST3.330e-6554.88Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR1.545e-5851.39Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F08EF RVDevelop1 Citrus clementina cDNA clone C32012F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bp
TTGCCCGACTCCGAATGGAGAAGAGCCATAACTATGTGAGGAAAACAGCT
GAACTTGCCACACAGTTTTATCTCAATCCTGCCACTAGCCAACCTAATGT
TTCGGGACTAGTACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTC
AGTCAGATATGTTTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTA
GATGTTTCTTATGGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATC
TGCTGAAAGTCTGTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAG
GAAAGTATTTTGAAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGT
GCTGATGACACGCTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAAT
TGTTTGGGAAAATTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTA
CTGGTGAGATTGTCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAG
AACAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAA
GTCATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCA
CACTCGAGTTTGTTACCAACAATCACAAGAGGGATCCCAGTTTTGCAGAG
GCTTTGGCGGTATTGGTGGAATACTCCGCTACAGCTTGATATGAGATCAT
TTGATGAAGTTTCTGATGATGGAGAAATTATGATGATT
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