FC920757

Overview
NameFC920757
Unique NameFC920757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:708..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.545e-58
Identity = 114/221 (51.58%), Postives = 158/221 (71.49%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEALAVL 665
            ARLRME  +NY+RK AE A   +++  + + NV+GL++AGSA+FK  L QSD+FD RL AK+LK+VDV+YGGENGF QAIELSA++LSN+KFI+EK+++ K+FEE++QDT KY +G +DT+K+L MGAV+ ++++ENL+ TRYVLKN  TG     +L  EQE N +NF ++    ELE  EK  L EW  + Y +FG  LEF+T+  +    F      L
Sbjct:  191 ARLRMESRNNYLRKVAEQAVVQFIS--SDKVNVAGLIIAGSAEFKNVLVQSDLFDQRLAAKVLKIVDVAYGGENGFTQAIELSADTLSNIKFIREKKVMSKFFEEVAQDTKKYCYGVEDTMKSLLMGAVEVILLFENLNFTRYVLKNPTTGIEKTLYLTPEQEENHDNFIEN--GEELEALEKGPLPEWIVDNYMKFGAGLEFITDRSQEGAQFVRGFGGL 407          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.666e-58
Identity = 110/221 (49.77%), Postives = 157/221 (71.04%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEALAVL 665
            +RLRME  +NY+RK AE +   +++    + NV+GL++AGSA+FK  L QSD+FD RL AK+LK+VDV+YGGENGF QAIELSA++LSN+KFI+EK+++ K+FEE++QDT KY +G +DT+++L MGA++ ++++ENL+ TRYVLKN  TG     +L  EQE N +NF ++    ELE  EK  L EW  + Y +FG  LEF+T+  +    F      L
Sbjct:  191 SRLRMESRNNYLRKVAEQSVVQFIS--NDKVNVAGLIIAGSAEFKNVLVQSDLFDQRLAAKVLKIVDVAYGGENGFTQAIELSADTLSNIKFIREKKVMSKFFEEVAQDTKKYCYGVEDTMRSLIMGAIEVILLFENLNFTRYVLKNPTTGAEKTLYLTPEQEENHDNFMEN--GEELEALEKGPLPEWIVDNYMKFGAGLEFITDRSQEGAQFVRGFGGL 407          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 117/219 (53.42%), Postives = 157/219 (71.69%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQE--TNQNNF-RDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR EK HNYVRK AE A Q ++     +PNV+G+VLAGSADFKTEL QSD+FD RLQ++I+K VDVSYGG+ GFNQAIEL+A++LSNVK++QEK+LI ++F+EIS D+GKY FG  DT+ AL  GAV+TL+ + +LD+ RY  KN+  G  VI ++ +EQE   + N+F  D  T AE+E+     L EW A  Y+ +G  LEFV++  +    F +
Sbjct:  188 ARLRDEKRHNYVRKVAEGAVQHFITD--DKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNS-EGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVK 403          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.590e-57
Identity = 103/216 (47.69%), Postives = 146/216 (67.59%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRY-VLKNT-VTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            AR+RME+ HNY+RK AE ATQ ++     +PN+ GLVLAGSA+FK  L QSD+FDPRL+A ++KVVDV++ G+ G NQAI+L+A++LS VK +QEK+L+  +F++I+ DT  Y FG  DTLK L+ GAV+TLIV+E+L+I RY V+KN     E    H+  E+E  ++N     +       E+   ++W A  YR+FGC LE +TN  +    F
Sbjct:  192 ARIRMERRHNYLRKVAEGATQLFIT--NDRPNIVGLVLAGSAEFKEVLYQSDLFDPRLKAIVVKVVDVAHPGDVGLNQAIDLAADALSGVKLVQEKKLLQGFFDQIACDTQLYCFGVQDTLKCLEAGAVETLIVYEDLNIYRYTVVKNRGADDEETFVHVMSEEEAKRSNIHMQESGKTRNEIEQEDFVDWLATNYRKFGCALELITNRSQEGTQF 405          

HSP 2 Score: 43.1282 bits (100), Expect = 6.590e-57
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEG+QF RGFGGIGG+LRY L
Sbjct:  398 RSQEGTQFVRGFGGIGGVLRYKL 420          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.888e-56
Identity = 107/216 (49.54%), Postives = 152/216 (70.37%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR EK HNY+RK AELA   ++     +PNV+GLVLAG+A FK ELS++DM D RL   I+ +VDVSYGGENG N+AI LSA++L+NVKF+ EK+L+ K+FEEIS DTG  VFG  DT+KAL++GAV+T++++E L+ITRYV+KN V G+     LN  Q+ +   F+D A+  +++V  +  L EW  + Y+ +   +EF+T+  +    F +
Sbjct:  196 ARLREEKRHNYLRKVAELAGSNFIT--NDKPNVTGLVLAGNAGFKNELSETDMLDKRLLPIIVSIVDVSYGGENGLNEAITLSADALTNVKFVAEKKLVSKFFEEISLDTGMIVFGVQDTMKALELGAVETILLFEELEITRYVIKNPVKGDTRTLFLNPTQQKDSKYFKDQASGLDMDVISEDQLAEWLCHNYQNYXAQVEFITDKSQEGYQFVK 409          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.206e-56
Identity = 106/216 (49.07%), Postives = 152/216 (70.37%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR EK HNY+RK AELA   ++     +PNV+GLVLAG+A FK ELS++DM D RL   I+ +VDVSYGGENG N+AI LSA++L+NVKF+ EK+L+  +FE+IS DTG  VFG  DT+KAL++GAV+T++++E L+ITRYV+KN V G+     LN  Q+ +   F+D A+  +++V  +  L EW  + Y+ +G  +EF+T+  +    F +
Sbjct:  196 ARLREEKRHNYLRKVAELAGSNFIT--NDKPNVTGLVLAGNAGFKNELSETDMLDKRLLPIIVSIVDVSYGGENGLNEAITLSADALTNVKFVAEKKLVSTFFEQISLDTGMIVFGVQDTMKALELGAVETILLFEELEITRYVIKNPVKGDTRTLFLNPTQQKDSKYFKDQASGLDMDVIAEDQLAEWLCHNYQNYGAQVEFITDKSQEGYQFVK 409          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.933e-55
Identity = 105/219 (47.95%), Postives = 155/219 (70.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLK---NTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            AR+R E+ HNY+RK AE  T  ++     +PNV GL+LAGSADFKT+L++SD+FDPRL   ++K+VD++YGGENGFNQAIELS+++L NVKF+ EK+++G++F+EIS+DTG++VFG  DT++ L+ GAV+ L+++ENL+  R  LK   NTVT +I  K    ++  + N FRD     E E+ + + L EWF + Y++FG  LE +T+       F +
Sbjct:  193 ARIRTERRHNYLRKVAETMTAVFIT--NDRPNVKGLILAGSADFKTDLNKSDLFDPRLSPLVIKIVDIAYGGENGFNQAIELSSDALRNVKFVHEKKIVGRFFDEISKDTGRFVFGLKDTMEGLEYGAVEVLMIFENLEHNRLSLKDNNNTVTFKIFPK----KETPSGNKFRDE-NGVEYEIIDNTPLSEWFLDNYKKFGTHLEIITDKSSEGNQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 104/214 (48.60%), Postives = 152/214 (71.03%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            AR+R+EK  NY+RK AE  T  ++      PNV GL+LAGSA+FK +L +SD+FD RLQ  ++K+VD+SYGGENGFNQAIELS+++L +VKFI EK++IGK+F+EI++DTGKYVFG  DTL+A+DMG+VD LI++ENL+  R +L++     IV + L++ +  + + +++  T  E EV +   L EWF + Y+++   LE VT+       F
Sbjct:  193 ARIRIEKRRNYLRKVAESTTACFIT--NDMPNVKGLILAGSAEFKNDLQKSDLFDLRLQPIVIKLVDISYGGENGFNQAIELSSDALKSVKFIHEKKVIGKFFDEIAKDTGKYVFGIKDTLEAMDMGSVDILIIYENLEYNRLILRD-ANDNIVNETLHKNKCPSGSKYKNETTGVEYEVLDNIPLTEWFMDNYKKYVSHLEIVTDKSSEGSQF 403          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.014e-54
Identity = 103/216 (47.69%), Postives = 150/216 (69.44%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLR+EK HNY++K AE+A   ++     + NV G+VLAG+A+FK EL+ ++  D R++AK++ ++DV+YGGENGFNQAIELS   L NVKFI+EK LI K FEE++Q++    +G  DT+KAL+MGAV+TL++WENL+   + LKN VT E     L+ +Q T +N+F+D A   EL + E+ +L EW  + Y+ +G  LEFVT+  +    F +
Sbjct:  189 ARLRLEKRHNYMKKVAEVAINCFIQ--NDRVNVLGIVLAGAAEFKNELAANEYLDQRIRAKVVTIIDVNYGGENGFNQAIELSQVQLQNVKFIKEKNLITKLFEEVAQNSITVCYGLTDTMKALEMGAVETLVIWENLEFIWFKLKNPVTKEESTVVLSPQQATEKNHFQDEANQCELNIVERFALTEWLIDNYKNYGARLEFVTDRSQEGSQFVK 402          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.041e-52
Identity = 97/222 (43.69%), Postives = 143/222 (64.41%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPA---TSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEI---VIKHLNREQETNQNNFRD--SATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLR E  HNYVRK AE A   +++     T++P VSGL+L GSADFK  LS S +FD RLQ+ ++K +D++YGGE GFNQAIE++ ++L +VK IQE +L+ ++ E I++DT +  FG  DT++ L+M AV+ LIVW++L   R  L+  + GE    VIK+L + Q +N    R+  +    +L++     LLEWF + Y+ +G +LEF+TN       F
Sbjct:  196 ARLREEARHNYVRKVAERANSLFISSGPTGTNKPIVSGLILGGSADFKNVLSTSAIFDQRLQSIVMKQIDINYGGEQGFNQAIEMAGDTLKDVKLIQEVKLLTEFTENIAKDTKRVCFGITDTIRCLEMSAVEKLIVWDDLPYHRVTLQCVINGETSAPVIKYLLKSQMSNPKYLREVINGEEVQLDIMGDQLLLEWFVDNYKNYGASLEFITNRSAEGTQF 417          

HSP 2 Score: 38.891 bits (89), Expect = 2.041e-52
Identity = 15/23 (65.22%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +S EG+QFC GFGGIGG+LR+ +
Sbjct:  410 RSAEGTQFCSGFGGIGGLLRWQV 432          
The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ERF1_BLEAM1.545e-5851.58Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU7.666e-5849.77Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO4.969e-5753.42Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB6.590e-5747.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT1.888e-5649.54Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE4.206e-5649.07Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA7.933e-5547.95Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA2.308e-5448.60Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_LOXST3.014e-5447.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA2.041e-5243.69Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F08EF RVDevelop1 Citrus clementina cDNA clone C32012F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bp
TTGCCCGACTCCGAATGGAGAAGAGCCATAACTATGTGAGGAAAACAGCT
GAACTTGCCACACAGTTTTATCTCAATCCTGCCACTAGCCAACCTAATGT
TTCGGGACTAGTACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTC
AGTCAGATATGTTTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTA
GATGTTTCTTATGGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATC
TGCTGAAAGTCTGTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAG
GAAAGTATTTTGAAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGT
GCTGATGACACGCTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAAT
TGTTTGGGAAAATTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTA
CTGGTGAGATTGTCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAG
AACAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAA
GTCATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCA
CACTCGAGTTTGTTACCAACAATCACAAGAGGGATCCCAGTTTTGCAGAG
GCTTTGGCGGTATTGGTGGAATACTCCGCTACAGCTTGATATGAGATCAT
TTGATGAAGTTTCTGATGATGGAGAAATTATGATGATT
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