FC920757

Overview
NameFC920757
Unique NameFC920757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:708..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 103/219 (47.03%), Postives = 139/219 (63.47%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEALA 659
            ARLR+EK HNY+RK  E+ATQ +++    + NV GLVLAGS DFK ELS + MFDPRL  KI+K+VDVSYGGENG NQAIEL+ ESL+NVKF+QEK +I K+F+ I+ D+G  V+G  DT++ L  G ++ ++ +E L   R   KN VT +I    +   +  N  +F+D     ELE  E  +L EW A  Y  FG  L F+T+       F +  +
Sbjct:  190 ARLRVEKRHNYLRKVCEVATQTFISQ--DKINVQGLVLAGSGDFKNELSTTQMFDPRLACKIIKIVDVSYGGENGLNQAIELAQESLTNVKFVQEKNVISKFFDCIAIDSGTVVYGVQDTMQLLLDGVIENILCFEELTTLRVTRKNKVTEQITHIFIPPNELNNPKHFKDG--EHELEKIEVENLTEWLAEHYSEFGAELYFITDKSAEGCQFVKGFS 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.112e-22
Identity = 48/161 (29.81%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ 488
            R+R +++H ++++  E A + +L P      + G+++ G    K E  + D     L+ KI+ +VD+SY GE G  + +  +A+ L + + I+E+ L+ ++ + I +DTG   +G  +  KAL++GAVDTL++ E  D  R  +K    G   +K ++ E+
Sbjct:  189 RIREQETHEFMKRIGEHANRIFL-PLLESGELKGIIVGGPGPTKEEFVEGDYLHHELKKKIIGIVDISYHGEYGLRELVAKAADILRDHEVIRERNLVNEFLKHIVKDTGLATYGEREVRKALELGAVDTLLISEGYDKVRVHVKCNNCGWEELKTMSEEE 348          

HSP 2 Score: 32.7278 bits (73), Expect = 1.112e-22
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 2
Query:  584 QEVWLHTRVCYQQSQEGSQFCRGFGGIGGILRYSL 688
            +E   +  +    ++EG QF R FGG+G ILR+ +
Sbjct:  383 EEAGSNVEIISLDTEEGQQFYRAFGGLGAILRFRI 417          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 49/161 (30.43%), Postives = 92/161 (57.14%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ 488
            R+R +++H ++++ AE A + +L P   +  + G+++ G    K E    D     L+ K++ VVD+SY GE G  + +E +++ LS  + ++E++LI  +F  + +DTG   +G  +  KAL++GAVDTL++ E  D  R   K    G   +K ++ ++
Sbjct:  186 RIREQETHEFMKRIAEHAAKAFL-PLLEKGELKGIIIGGPGPTKEEFVDGDYLHHELRKKVIGVVDISYHGEYGLRELVEKASDILSEHEAVKERKLIQDFFRHLVKDTGLITYGEREVRKALELGAVDTLLISEGYDKVRVKAKCNACGWEELKTMSEQE 345          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.861e-19
Identity = 54/203 (26.60%), Postives = 104/203 (51.23%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQN-----NFRDSA-------TSAELEVQEKSSLLEWFA 575
            RL  + +H ++ +  E +T+ ++ P   +  + GL++ G  + K E ++ D     L+ KI+   D+ Y  E G  + +E +++ L ++  ++EK LI K+F+E I  D G   +G    ++ L+MGA+DTLIV E++++TR  +K          + N +QE N        F D          S  + ++E+  ++E+ +
Sbjct:  188 RLIDDAAHQFMVRIGEYSTESFM-PILEEKKLRGLLIGGPGNTKNEFAEKDFLHHELKKKIIDTFDLCYTEEFGIRELLEKASDLLRDLDLMKEKNLIQKFFKELIKDDGGLSAYGESQVMRYLEMGAIDTLIVTEDIELTRVTIK--------CNNCNFKQEINVKTRDLYKFEDEVKTKICKQCSGSMYIEEEKDIIEYLS 381          

HSP 2 Score: 26.5646 bits (57), Expect = 3.861e-19
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  623 SQEGSQFCRGFGGIGGILRYSL 688
            ++EGSQ  + F G+  ILRY +
Sbjct:  398 TEEGSQISKAFKGMAAILRYKI 419          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 47/161 (29.19%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ 488
            R+R +++H ++++  E A + +L P   +  + G+++ G    K +  + D     L+ KI+ VVD+SY GE G  + +E +++ L + + I+EK+L+ ++ + + +DTG   +G  +  +AL++GAVDTL++ E  D  R   K    G   +K ++ E+
Sbjct:  189 RIREQETHEFMKRIGEHANRVFL-PLLEKGELKGIIVGGPGPTKEDFVEGDYLHHELKKKIIGVVDISYHGEYGLRELVEKASDILRDHEVIREKKLVNEFLKHVVKDTGLATYGEREVRRALEIGAVDTLLISEGYDKVRVRAKCNHCGWEELKTMSEEE 348          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 43/141 (30.50%), Postives = 85/141 (60.28%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428
            R+R +++H ++++  E A + +L P   +  + G+++ G    K E  + D     L+ K++ VVD+SY GE G  + +E +++ L + + ++E++LI ++F+ + +DTG   +G  +  KAL++GAVD L++ E  D  R
Sbjct:  186 RIREQETHEFMKRIGEHANKAFL-PLLEKGELRGIIIGGPGPTKEEFVEGDYLHHELRKKVIGVVDISYHGEYGLRELVEKASDILKDHEAVKERQLIQEFFKHLVKDTGMITYGEKEVRKALELGAVDKLLISEGYDKVR 325          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 46/161 (28.57%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ 488
            R+R +++H ++++  E A + +L P   +  + G+++ G    K E  + +     L+ KIL VVD+SY GE G  + +E +++ L + + I+EK+L+ ++ + + +DTG   +G  +  +AL++GAVD L++ E  +  R  +K    G   +K ++ E+
Sbjct:  189 RIREQETHEFMKRIGEHANRAFL-PLLEKGELKGIIIGGPGPTKEEFVEGEYLHHELKKKILGVVDISYHGEYGLRELVEKASDILRDHEVIREKKLVNEFLKHVVKDTGLATYGEREVRRALEIGAVDVLLISEGYNKVRVRVKCNHCGWEELKTMSEEE 348          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 56/231 (24.24%), Postives = 120/231 (51.95%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE----------LEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEALAVLV 668
            +LR+   H++ ++  + A++ +L  A  Q +  G+++ G +  K E    + F   ++ K+L + DV+Y  E+G ++ +  ++E L ++  + EK+L+ ++F E+  D+GK  +G D+  + L +GAVD L++ E+L   R  +K T          + EQ+T++  F+   +S+           LE+ EK  +++  +    + G  +EF++ + +      +A   +V
Sbjct:  186 QLRLIAIHDFYKRIGDAASEVFL--AVEQKDFEGVLIGGPSPTKEEFEAGNFFHHEIEKKVLDLFDVAYTDESGLSELVNAASERLEDLDLMVEKKLMQQFFRELVSDSGKATYGEDNVRENLIIGAVDILLISEDLRAVRETVKCT--------SCDYEQKTSR-EFKPGDSSSPTGNCPKCGSYLEITEKVDVVDQLSEICDQMGTRVEFISTDFEEGSQLLKAFGGVV 405          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 59/229 (25.76%), Postives = 115/229 (50.22%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRY-VLKNTVTGEIVIKHLNREQETNQNNFR--DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEY 674
            R+R +++H ++++  E A+  +L P   +  + G+++ G    K E  + +     L+ +IL VVD+SY GE G  + +E +++ L   + ++E++L+ ++F+ + +DTG   +G  +  KAL++GAVD L++ E  D  R   L N    E +      E E  + N +      S  + V EK  + E         G  +E ++ + +    F +A   +A ++ Y
Sbjct:  186 RIREQEAHEFMKRIGEHASSVFL-PLLEKDELKGIIIGGPGPTKEEFVEGEYLHHELRKRILGVVDISYHGEYGLRELVEKASDILREHEAVKERKLVQQFFKHLVKDTGLITYGEKEVRKALELGAVDILLLSEGYDRVRVKALCNNCGWEELKTMTEAEFELYKKNLKACPKCNSQNISV-EKWDVAEELIKIAEEGGAEVEIISLDTEEGQQFYKAFGGIAAILRY 412          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 59/231 (25.54%), Postives = 116/231 (50.22%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT---VTGEIVIKHLNREQETNQNNFRDSAT-SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEY 674
            RL  + +H ++ +  E AT+ ++ P   +  + GL+L G  + K E ++ D     L+ KI+   D+ Y  E G  + ++ +++ L ++  ++EK LI ++F+E I  D G   +G    +K L+MGA+DTLIV E++ ITR  +K     +T E+ +K     +   Q   +   T    + + E+  ++E+ ++        L  V+ + +     + A   +A ++ Y
Sbjct:  188 RLIDDAAHQFMVRIGEYATESFM-PILEEKKLKGLLLGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLDKASDLLRDIDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVKCNNCDITQEVNVKTNEMFKFEEQLKTKACPTCGGAMYIDEEKDIIEYLSDLCNMHNTDLIVVSTDTEEGSQISRAFKGMAAILRY 417          
The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ERF1_TETTH6.504e-4947.03Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_PYRFU1.112e-2229.81Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THEON4.857e-2030.43Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METVS3.861e-1926.60Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_PYRAB7.014e-1929.19Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRKO2.665e-1830.50Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO4.546e-1828.57Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_METBU4.546e-1824.24Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_THESM1.013e-1725.76Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METMP1.728e-1725.54Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank descriptionC32012F08EF RVDevelop1 Citrus clementina cDNA clone C32012F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bp
TTGCCCGACTCCGAATGGAGAAGAGCCATAACTATGTGAGGAAAACAGCT
GAACTTGCCACACAGTTTTATCTCAATCCTGCCACTAGCCAACCTAATGT
TTCGGGACTAGTACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTC
AGTCAGATATGTTTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTA
GATGTTTCTTATGGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATC
TGCTGAAAGTCTGTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAG
GAAAGTATTTTGAAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGT
GCTGATGACACGCTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAAT
TGTTTGGGAAAATTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTA
CTGGTGAGATTGTCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAG
AACAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAA
GTCATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCA
CACTCGAGTTTGTTACCAACAATCACAAGAGGGATCCCAGTTTTGCAGAG
GCTTTGGCGGTATTGGTGGAATACTCCGCTACAGCTTGATATGAGATCAT
TTGATGAAGTTTCTGATGATGGAGAAATTATGATGATT
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