FC920757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13 Identity = 41/141 (29.08%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428 RLR H + +K E+A++ L + + G+++ G + K E + + LQ K+L + DV Y E+G + +E + + L V I+EK L+ ++ +E+++D G +G ++ + +++GAVDTL++ E+L R Sbjct: 183 RLREIAIHEFYKKVGEMASEALL---PYKDKLIGILIGGPSPTKEEFYEGEYLHHELQKKVLGLFDVGYTDESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVARD-GLAAYGEEEVRRYIELGAVDTLLLSEDLRYER 319
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12 Identity = 36/150 (24.00%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG 455 +LR+ H++ ++ + A++ ++ A ++ G+++ G + K E + L KIL + D +Y E+G ++ + + E L +++ + +K + +F+E+ D+GK +G L++ +VD L++ E+L R K +V G Sbjct: 187 QLRLIAIHDFYKRIGDAASEVFM--AVDHKDLKGVLIGGPSPTKEEFHAGEFLHHELMKKILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCG 334
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12 Identity = 52/225 (23.11%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 24 SHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNR----EQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEY 674 +H ++++ + A + +L P + + G+++ G K E + D L+ +L D+ Y E G + +E +A L +V+ ++E+ + ++ +E I +D G +G + L+AL MGAVDTLIV E L+ + + + K +N+ + E N + L + E+ +E+ + + G L V++ + A +A ++ Y Sbjct: 194 AHEFLQRVGQKANEQFL-PLLQEKKLRGILVGGPGHTKNEFVEGDYLHHELKKIVLDTFDLCYTEEFGIRELLEKAAPLLKDVELMKEREAVQRFLKELIKEDGGLACYGEKEVLEALMMGAVDTLIVSEELEKYKVKIACNNCDYLEEKTVNKLELIKLEEELKNAQCPKCGGALSIVEEKDYIEYLSELCEQSGAKLVTVSSETEEGAMILNAFKGIAAILRY 417
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 4.383e-12 Identity = 45/210 (21.43%), Postives = 106/210 (50.48%), Query Frame = 3 Query: 3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKR 632 ARLR+E N+ ++ A +A ++ + + G+++ G + K E D L ++ DVSY E+G + ++ + + L++ + +++K + ++FE++ + +G + T K L MGAVD L++ E+L + V+ G + ++R + ++ D +++ E E+ ++E+ + + G +F++ + ++ Sbjct: 193 ARLRLEAIDNFYQEVAGMANDLFV---PKRHEIDGVLVGGPSPTKDEFLDGDYLHHELGDVVVGKFDVSYTDESGLHDLVDSAQDVLADQEVMKDKAEMEEFFEKL-HGGEEATYGFEPTRKNLMMGAVDRLLLSEDLR-SDVVVYECPDGHEEYEVIDRRHDDPEHTCSDCGSAS--EKTEREDVIEYLMSIAEQRGTETKFISTDFEK 395 HSP 2 Score: 27.7202 bits (60), Expect = 4.383e-12 Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2 Query: 626 QEGSQFCRGFGGIGGILRYS 685 ++G Q FGGI GILRY+ Sbjct: 394 EKGEQLHNAFGGIAGILRYA 413
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12 Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = 3 Query: 24 SHNYVRKTAELATQFYLNPATSQ-PNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428 +H ++++ E ++N A Q ++ G++L G K E D L+ K++ VD SY GE G + I+ S + LS + ++EK+L+ ++ E+ + G +G + + L MGAV+ L++ E+L R Sbjct: 194 AHEFLKRIGE-----HMNEAFLQIDDLKGIILGGPGHTKEEFLNGDYLHHELKKKVITTVDTSYTGEFGIREVIDKSMDVLSEIDVMREKKLVQRFLRELINEDGLASYGEREVRQHLQMGAVEVLLLSEDLKYQR 324
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12 Identity = 51/230 (22.17%), Postives = 108/230 (46.96%), Query Frame = 3 Query: 3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENL--DITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEYS 677 ARLR+E N+ ++ A +A ++ + + G+++ G + K E D LQ +L DV+Y E+G ++ + + L+ + +++K L+ +F+++ + K +G D T + L+MGAV+ L++ E+L D+ Y +N G +N T+ + + + + E+ ++ + G F++ + ++ A +A L+ YS Sbjct: 193 ARLRLEAIDNFYQEVAGMANDLFV---ADRHEIDGILVGGPSPTKDEFLDGDYLHHELQDMVLGKFDVAYTDESGLYDLVDAADDVLAEHEMLRDKELMEDFFKQL-HNGDKATYGFDQTRQNLNMGAVEQLLISEDLRKDVVAYTCEN---GHDEYDLINSSAGTDDHECSRCGATVDADDGEREDAIDHLMELADQRGTETVFISTDFEKGEQLLTAFGGVAGLLRYS 415
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11 Identity = 34/135 (25.19%), Postives = 70/135 (51.85%), Query Frame = 3 Query: 24 SHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428 +H ++++ + +L + + G+++ G K + + + KI+ +VD SY G+ G + I+ SA++L + +QEK+ + K+ + ++G +G + + L MGAV+TL++ ENL R Sbjct: 194 AHEFLKRIGRHVDEAFL---PLKDELKGVLIGGPGHTKNDFVDGEYIHYEIHDKIINIVDTSYTGDFGIREVIDESADTLDEMDIMQEKKFMRKFLTGLISESGLSTYGEKEVRQNLQMGAVETLLISENLKSKR 325 The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bpback to top |