FC920757

Overview
NameFC920757
Unique NameFC920757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:708..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 41/141 (29.08%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428
            RLR    H + +K  E+A++  L     +  + G+++ G +  K E  + +     LQ K+L + DV Y  E+G  + +E + + L  V  I+EK L+ ++ +E+++D G   +G ++  + +++GAVDTL++ E+L   R
Sbjct:  183 RLREIAIHEFYKKVGEMASEALL---PYKDKLIGILIGGPSPTKEEFYEGEYLHHELQKKVLGLFDVGYTDESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVARD-GLAAYGEEEVRRYIELGAVDTLLLSEDLRYER 319          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 36/150 (24.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    6 RLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG 455
            +LR+   H++ ++  + A++ ++  A    ++ G+++ G +  K E    +     L  KIL + D +Y  E+G ++ +  + E L +++ + +K  +  +F+E+  D+GK  +G       L++ +VD L++ E+L   R   K +V G
Sbjct:  187 QLRLIAIHDFYKRIGDAASEVFM--AVDHKDLKGVLIGGPSPTKEEFHAGEFLHHELMKKILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCG 334          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 52/225 (23.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:   24 SHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNR----EQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEY 674
            +H ++++  + A + +L P   +  + G+++ G    K E  + D     L+  +L   D+ Y  E G  + +E +A  L +V+ ++E+  + ++ +E I +D G   +G  + L+AL MGAVDTLIV E L+  +  +       +  K +N+    + E    N +       L + E+   +E+ +    + G  L  V++  +       A   +A ++ Y
Sbjct:  194 AHEFLQRVGQKANEQFL-PLLQEKKLRGILVGGPGHTKNEFVEGDYLHHELKKIVLDTFDLCYTEEFGIRELLEKAAPLLKDVELMKEREAVQRFLKELIKEDGGLACYGEKEVLEALMMGAVDTLIVSEELEKYKVKIACNNCDYLEEKTVNKLELIKLEEELKNAQCPKCGGALSIVEEKDYIEYLSELCEQSGAKLVTVSSETEEGAMILNAFKGIAAILRY 417          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.383e-12
Identity = 45/210 (21.43%), Postives = 106/210 (50.48%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKR 632
            ARLR+E   N+ ++ A +A   ++     +  + G+++ G +  K E    D     L   ++   DVSY  E+G +  ++ + + L++ + +++K  + ++FE++     +  +G + T K L MGAVD L++ E+L  +  V+     G    + ++R  +  ++   D  +++  E  E+  ++E+  +   + G   +F++ + ++
Sbjct:  193 ARLRLEAIDNFYQEVAGMANDLFV---PKRHEIDGVLVGGPSPTKDEFLDGDYLHHELGDVVVGKFDVSYTDESGLHDLVDSAQDVLADQEVMKDKAEMEEFFEKL-HGGEEATYGFEPTRKNLMMGAVDRLLLSEDLR-SDVVVYECPDGHEEYEVIDRRHDDPEHTCSDCGSAS--EKTEREDVIEYLMSIAEQRGTETKFISTDFEK 395          

HSP 2 Score: 27.7202 bits (60), Expect = 4.383e-12
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  626 QEGSQFCRGFGGIGGILRYS 685
            ++G Q    FGGI GILRY+
Sbjct:  394 EKGEQLHNAFGGIAGILRYA 413          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   24 SHNYVRKTAELATQFYLNPATSQ-PNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428
            +H ++++  E     ++N A  Q  ++ G++L G    K E    D     L+ K++  VD SY GE G  + I+ S + LS +  ++EK+L+ ++  E+  + G   +G  +  + L MGAV+ L++ E+L   R
Sbjct:  194 AHEFLKRIGE-----HMNEAFLQIDDLKGIILGGPGHTKEEFLNGDYLHHELKKKVITTVDTSYTGEFGIREVIDKSMDVLSEIDVMREKKLVQRFLRELINEDGLASYGEREVRQHLQMGAVEVLLLSEDLKYQR 324          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 51/230 (22.17%), Postives = 108/230 (46.96%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENL--DITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAEA---LAVLVEYS 677
            ARLR+E   N+ ++ A +A   ++     +  + G+++ G +  K E    D     LQ  +L   DV+Y  E+G    ++ + + L+  + +++K L+  +F+++  +  K  +G D T + L+MGAV+ L++ E+L  D+  Y  +N   G      +N    T+ +       + + +  E+   ++       + G    F++ + ++      A   +A L+ YS
Sbjct:  193 ARLRLEAIDNFYQEVAGMANDLFV---ADRHEIDGILVGGPSPTKDEFLDGDYLHHELQDMVLGKFDVAYTDESGLYDLVDAADDVLAEHEMLRDKELMEDFFKQL-HNGDKATYGFDQTRQNLNMGAVEQLLISEDLRKDVVAYTCEN---GHDEYDLINSSAGTDDHECSRCGATVDADDGEREDAIDHLMELADQRGTETVFISTDFEKGEQLLTAFGGVAGLLRYS 415          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 34/135 (25.19%), Postives = 70/135 (51.85%), Query Frame = 3
Query:   24 SHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR 428
            +H ++++      + +L     +  + G+++ G    K +    +     +  KI+ +VD SY G+ G  + I+ SA++L  +  +QEK+ + K+   +  ++G   +G  +  + L MGAV+TL++ ENL   R
Sbjct:  194 AHEFLKRIGRHVDEAFL---PLKDELKGVLIGGPGHTKNDFVDGEYIHYEIHDKIINIVDTSYTGDFGIREVIDESADTLDEMDIMQEKKFMRKFLTGLISESGLSTYGEKEVRQNLQMGAVETLLISENLKSKR 325          
The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RF1_ARCFU4.404e-1329.08Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METMA1.281e-1224.00Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METJA2.185e-1223.11Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALWD4.383e-1221.43Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF1_METTH4.869e-1228.68Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_HALMA8.305e-1222.17Peptide chain release factor subunit 1 OS=Haloarcu... [more]
RF1_METST4.122e-1125.19Peptide chain release factor subunit 1 OS=Methanos... [more]

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Properties
Property NameValue
Genbank descriptionC32012F08EF RVDevelop1 Citrus clementina cDNA clone C32012F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bp
TTGCCCGACTCCGAATGGAGAAGAGCCATAACTATGTGAGGAAAACAGCT
GAACTTGCCACACAGTTTTATCTCAATCCTGCCACTAGCCAACCTAATGT
TTCGGGACTAGTACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTC
AGTCAGATATGTTTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTA
GATGTTTCTTATGGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATC
TGCTGAAAGTCTGTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAG
GAAAGTATTTTGAAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGT
GCTGATGACACGCTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAAT
TGTTTGGGAAAATTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTA
CTGGTGAGATTGTCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAG
AACAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAA
GTCATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCA
CACTCGAGTTTGTTACCAACAATCACAAGAGGGATCCCAGTTTTGCAGAG
GCTTTGGCGGTATTGGTGGAATACTCCGCTACAGCTTGATATGAGATCAT
TTGATGAAGTTTCTGATGATGGAGAAATTATGATGATT
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