FC920761

Overview
NameFC920761
Unique NameFC920761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.920e-84
Identity = 155/212 (73.11%), Postives = 176/212 (83.02%), Query Frame = 3
Query:   57 VGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            VGGRNTVL DA+ RRIPL++D PT+IFGADVTHP  GEDSSPSIAAVVAS DWPEV+KY   V +Q+HR+E+I DLF   +D     V GGMI+EL+ SFR+A G  KP RIIFYRDGVSEGQF QVLL E+DAIRKACAS+E  Y PPVTFVVVQKRHHTRLF  +HH R+ +DRS NILPGTVVD+KICHP+EFDFYLCSH+GIQGTS P
Sbjct:  581 VGGRNTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSPSIAAVVASMDWPEVSKYKCSVSSQSHREEIIADLFTEVKDSQNRLVYGGMIRELIESFRKANGSYKPGRIIFYRDGVSEGQFSQVLLSEMDAIRKACASIEEGYLPPVTFVVVQKRHHTRLFPEDHHARDQMDRSRNILPGTVVDTKICHPSEFDFYLCSHSGIQGTSHP 792          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO17_ORYSJ (Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.228e-79
Identity = 147/228 (64.47%), Postives = 176/228 (77.19%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +M+K ++A+VALKIN K+GGRNTVLVDA+  R+P V D PTI+FGA VTHPHPG+ +S SIAAVVASQDWPEVTKYAGL+  QA  QE IQ LFK   DP RG  + GMIKE L+SF RAT +KP RIIFYRDGVS+GQ  Q L++EL AI+ ACAS+ P+Y P VT+VV+QK  HTRLFA ++++ N  D + NI  GTVVDS IC P +FDFYLCSH   QGT RP
Sbjct:  552 KMNKWYLASVALKINAKMGGRNTVLVDALEMRLPHVRDTPTIVFGAHVTHPHPGKANSSSIAAVVASQDWPEVTKYAGLISVQACHQESIQGLFKVQDDPERGTTTSGMIKEHLMSFYRATKRKPGRIIFYRDGVSKGQLPQALMHELGAIKMACASMGPDYNPLVTYVVLQKCRHTRLFA-DYYNANTHDSTANIRAGTVVDSNICQPNQFDFYLCSHRSTQGTKRP 778          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.127e-75
Identity = 142/226 (62.83%), Postives = 173/226 (76.55%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +K ++ NVALKINVK   ++++++                     ++H  PGEDS+ SIAAVVAS DWPE+TKY GLV AQ+HRQE+I+DLF   +DPV+  V+GGMI+E LI+FR+ TG++P+RIIFYRDGVSEGQF +VLL+E+DAIRKACASLE  Y PPVTFVVVQKRHHTRLF   H  R+  D+SGNILPGTV D +ICHPTEF FYLCSHAGIQGTSRP
Sbjct:  511 NKQYLENVALKINVKKSQQSSLVL---------------------MSHTPPGEDSASSIAAVVASMDWPEITKYRGLVSAQSHRQEIIEDLFSVGKDPVK-VVNGGMIREFLIAFRKKTGRRPERIIFYRDGVSEGQFSRVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVKDRQICHPTEFYFYLCSHAGIQGTSRP 714          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.056e-74
Identity = 149/241 (61.83%), Postives = 176/241 (73.03%), Query Frame = 3
Query:    9 MSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQ------DPVRGA-------VSGGMIKELLISF-RRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            + +  + NV+LKINVK GGRN+VL   +   +P   +  TIIFGADVTHP  GEDSS SIAAVVAS DWPE+TKY  LV AQ  RQE+IQDLF   +       P + A       + GGM +ELL+SF  +   +KPQRIIFYRDGVS+GQF  VLLYE+DAI+KA ASL+P Y+P VTFVVVQKRHHTRLF   H  ++  DRSGN+ PGTVVD+ ICHP+EFDFYLCSHAGIQGTSRP
Sbjct:  716 LDRQFLENVSLKINVKAGGRNSVLQRPL---VPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQEIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFYRDGVSDGQFLHVLLYEMDAIKKAIASLDPAYRPLVTFVVVQKRHHTRLFPEVHGRQDLTDRSGNVRPGTVVDTNICHPSEFDFYLCSHAGIQGTSRP 953          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO18_ORYSJ (Protein argonaute 18 OS=Oryza sativa subsp. japonica GN=AGO18 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.882e-64
Identity = 126/224 (56.25%), Postives = 164/224 (73.21%), Query Frame = 3
Query:   21 HMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            + ANVALKIN K GGRN+V ++ +   +P+VS  PTIIFGADVTHP   ++S+PSIA+VVAS DWPEVTKY  +V  QA R+E+IQDL               +++ELL +F+R +  +P+++IFYRDGVSEGQF QV+  E+  I KA  SL    +P +TF+VVQKRHHTRLF NN++D   +D +GN+ PGTVVD+ ICHP EFDF+LCS AGI+GTSRP+
Sbjct:  793 YCANVALKINAKAGGRNSVFLN-VEASLPVVSKSPTIIFGADVTHPGSFDESTPSIASVVASADWPEVTKYNSVVRMQASRKEIIQDL-------------DSIVRELLNAFKRDSKMEPKQLIFYRDGVSEGQFQQVVESEIPEIEKAWKSLYAG-KPRITFIVVQKRHHTRLFPNNYNDPRGMDGTGNVRPGTVVDTVICHPREFDFFLCSQAGIKGTSRPS 1001          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_RABIT (Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=EIF2C2 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.644e-61
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+
Sbjct:  541 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 744          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_MOUSE (Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.644e-61
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+
Sbjct:  561 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_HUMAN (Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.644e-61
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+
Sbjct:  560 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 763          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_RAT (Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 8.677e-61
Identity = 127/223 (56.95%), Postives = 152/223 (68.16%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE  YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+
Sbjct:  561 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKEYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_XENTR (Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.480e-60
Identity = 126/223 (56.50%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  572 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------SAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDRNER--VGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPS 775          
The following BLAST results are available for this feature:
BLAST of FC920761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
AGO11_ORYSJ1.920e-8473.11Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO17_ORYSJ9.228e-7964.47Protein argonaute 17 OS=Oryza sativa subsp. japoni... [more]
AGO13_ORYSJ2.127e-7562.83Protein argonaute 13 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ1.056e-7461.83Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]
AGO18_ORYSJ2.882e-6456.25Protein argonaute 18 OS=Oryza sativa subsp. japoni... [more]
AGO2_RABIT6.644e-6156.95Protein argonaute-2 (Fragment) OS=Oryctolagus cuni... [more]
AGO2_MOUSE6.644e-6156.95Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1... [more]
AGO2_HUMAN6.644e-6156.95Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1... [more]
AGO2_RAT8.677e-6156.95Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2... [more]
AGO2_XENTR1.480e-6056.50Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c... [more]

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Properties
Property NameValue
Genbank descriptionC32012F12EF RVDevelop1 Citrus clementina cDNA clone C32012F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920761 ID=FC920761; Name=FC920761; organism=Citrus clementina; type=EST; length=692bp
GTTTTCAAATGAGCAAGCACCACATGGCCAATGTGGCTTTGAAGATAAAT
GTGAAGGTTGGAGGGAGGAATACTGTGCTTGTTGATGCAATATCAAGGCG
TATACCTCTAGTCAGTGACAGACCCACTATCATTTTTGGTGCTGATGTCA
CCCATCCTCACCCTGGAGAGGATTCAAGCCCGTCTATTGCCGCTGTCGTA
GCTTCTCAGGATTGGCCAGAGGTCACAAAGTATGCTGGATTGGTTTGTGC
TCAAGCTCATAGGCAGGAGCTCATTCAAGACTTGTTCAAGACATGGCAGG
ATCCTGTAAGAGGAGCAGTGTCTGGTGGGATGATCAAGGAACTCCTTATA
TCTTTCCGTAGAGCTACTGGACAAAAGCCTCAGCGCATAATCTTTTACAG
GGATGGTGTCAGTGAAGGACAGTTCTATCAAGTATTATTGTATGAACTTG
ATGCTATCCGTAAGGCATGCGCCTCCTTGGAACCAAACTATCAGCCTCCT
GTGACTTTTGTTGTGGTTCAGAAGCGTCACCACACTAGGTTGTTTGCCAA
CAACCATCATGATCGCAATGCAGTTGACAGGAGTGGAAATATATTGCCTG
GTACTGTTGTGGATTCAAAAATTTGTCACCCAACTGAGTTTGACTTTTAC
CTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCC
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