FC920761

Overview
NameFC920761
Unique NameFC920761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_XENLA (Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.480e-60
Identity = 126/223 (56.50%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  563 LSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------SAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDRNER--VGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPS 766          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_BOVIN (Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.480e-60
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   24 MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+   PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+
Sbjct:  561 LSNLWLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO3_MOUSE (Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.594e-60
Identity = 128/227 (56.39%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL YEL AIR+AC SLE +YQP +T++VVQKRHHTRLF  +  +R  V RSGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  557 SPQTLSNLCLKINVKLGGINNILVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDL-------------ASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER--VGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO3_HUMAN (Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 9.594e-60
Identity = 128/227 (56.39%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL YEL AIR+AC SLE +YQP +T++VVQKRHHTRLF  +  +R  V RSGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  557 SPQTLSNLCLKINVKLGGINNILVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDL-------------ASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER--VGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO3_DANRE (Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.594e-60
Identity = 128/227 (56.39%), Postives = 151/227 (66.52%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL YEL AIR+AC SLE  YQP +T++VVQKRHHTRLF  +  +R  V RSGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  557 SPQTLSNLCLKINVKLGGINNILVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEVIQDL-------------ASMVRELLIQFYKSTHYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRAER--VGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO3_CHICK (Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.594e-60
Identity = 128/227 (56.39%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL YEL AIR+AC SLE +YQP +T++VVQKRHHTRLF  +  +R  V RSGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  557 SPQTLSNLCLKINVKLGGINNILVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDL-------------ASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER--VGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO3_BOVIN (Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 9.594e-60
Identity = 128/227 (56.39%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+IQDL               M++ELLI F ++T  KP RIIFYRDGVSEGQF QVL YEL AIR+AC SLE +YQP +T++VVQKRHHTRLF  +  +R  V RSGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  557 SPQTLSNLCLKINVKLGGINNILVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDL-------------ASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER--VGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPS 764          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4_XENLA (Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 121/227 (53.30%), Postives = 153/227 (67.40%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKIN K+GG N VLV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE  Q+L  + Q+ ++   +  M++ELLI F ++T  KP RII+YR GVSEGQ  QV   EL AIRKAC SLE +Y+P +T++VVQKRHHTRLF ++  +R  V +SGN+  GT VDS I HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  571 SPQTLSNLCLKINAKLGGINNVLVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDG-HPSRYCATVRVQTSRQETTQELLYS-QEVIQDLCN--MVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELMAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKTER--VGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPS 788          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4_HUMAN (Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 121/227 (53.30%), Postives = 153/227 (67.40%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKIN K+GG N VLV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+ Q+L  + Q+ ++   +  M++ELLI F ++T  KP RII+YR GVSEGQ  QV   EL AIRKAC SLE +Y+P +T++VVQKRHHTRLF  +  +R  V +SGN+  GT VDS I HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  548 SPQTLSNLCLKINAKLGGINNVLVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDG-HPSRYCATVRVQTSRQEISQELLYS-QEVIQDLTN--MVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTER--VGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPS 765          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO7_ORYSJ (Protein argonaute 7 OS=Oryza sativa subsp. japonica GN=AGO7 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.445e-55
Identity = 114/230 (49.57%), Postives = 148/230 (64.35%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLV--SDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +++   + N+ALKIN K+GG N  L  +   +IP +  S+ P +  GADVTHPHP +DSSPS+ AVVAS +WP   KY   + +Q HR+E+I+ L     D + G        ELL  F +  G+ P RIIF+RDGVSE QFY+VL  E+ A+R  C S  P Y+P +TF+VVQKRHHTRLF    +  ++     NI PGTVVD+ I HP EFDFYLCSH G +GTSRP
Sbjct:  746 KLTSQFLTNLALKINAKLGGCNIALYSSFPCQIPRIFLSEEPVMFMGADVTHPHPLDDSSPSVVAVVASMNWPSANKYISRMRSQTHRKEIIEQL-----DVMAG--------ELLEEFLKEVGKLPSRIIFFRDGVSETQFYKVLKEEMHAVRTTC-SRYPGYKPLITFIVVQKRHHTRLFHRERNGSSSHYSDQNIPPGTVVDTVITHPREFDFYLCSHWGTKGTSRP 961          
The following BLAST results are available for this feature:
BLAST of FC920761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
AGO2_XENLA1.480e-6056.50Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE... [more]
AGO2_BOVIN1.480e-6056.95Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 S... [more]
AGO3_MOUSE9.594e-6056.39Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2... [more]
AGO3_HUMAN9.594e-6056.39Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1... [more]
AGO3_DANRE9.594e-6056.39Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 ... [more]
AGO3_CHICK9.594e-6056.39Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=... [more]
AGO3_BOVIN9.594e-6056.39Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 S... [more]
AGO4_XENLA1.434e-5553.30Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE... [more]
AGO4_HUMAN1.434e-5553.30Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1... [more]
AGO7_ORYSJ2.445e-5549.57Protein argonaute 7 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC32012F12EF RVDevelop1 Citrus clementina cDNA clone C32012F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920761 ID=FC920761; Name=FC920761; organism=Citrus clementina; type=EST; length=692bp
GTTTTCAAATGAGCAAGCACCACATGGCCAATGTGGCTTTGAAGATAAAT
GTGAAGGTTGGAGGGAGGAATACTGTGCTTGTTGATGCAATATCAAGGCG
TATACCTCTAGTCAGTGACAGACCCACTATCATTTTTGGTGCTGATGTCA
CCCATCCTCACCCTGGAGAGGATTCAAGCCCGTCTATTGCCGCTGTCGTA
GCTTCTCAGGATTGGCCAGAGGTCACAAAGTATGCTGGATTGGTTTGTGC
TCAAGCTCATAGGCAGGAGCTCATTCAAGACTTGTTCAAGACATGGCAGG
ATCCTGTAAGAGGAGCAGTGTCTGGTGGGATGATCAAGGAACTCCTTATA
TCTTTCCGTAGAGCTACTGGACAAAAGCCTCAGCGCATAATCTTTTACAG
GGATGGTGTCAGTGAAGGACAGTTCTATCAAGTATTATTGTATGAACTTG
ATGCTATCCGTAAGGCATGCGCCTCCTTGGAACCAAACTATCAGCCTCCT
GTGACTTTTGTTGTGGTTCAGAAGCGTCACCACACTAGGTTGTTTGCCAA
CAACCATCATGATCGCAATGCAGTTGACAGGAGTGGAAATATATTGCCTG
GTACTGTTGTGGATTCAAAAATTTGTCACCCAACTGAGTTTGACTTTTAC
CTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCC
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