FC920761

Overview
NameFC920761
Unique NameFC920761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4_MOUSE (Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.194e-55
Identity = 121/227 (53.30%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LK+N K+GG N VLV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE+ Q+L  + Q+ V+   S  M +ELLI F ++T  KP RII+YR GVSEGQ  QV   EL AIRKAC SLE +Y+P +T++VVQKRHHTRLF  +  +R  V +SGN+  GT VDS + HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  548 SPQTLSNLCLKMNAKLGGINNVLVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDG-HPSRYCATVRVQTSRQEITQELLYS-QEVVQDLTS--MARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKMER--VGKSGNVPAGTTVDSTVTHPSEFDFYLCSHAGIQGTSRPS 765          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4_CHICK (Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.194e-55
Identity = 121/227 (53.30%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKIN K+GG N VLV     + P V  +P I  GADVTHP  G+   PSIAAVV S D    ++Y   V  Q  RQE  Q+L  + Q+ ++   +  M++ELLI F ++T  KP RII+YR GVSEGQ  QV   EL AIRKAC SLE +Y+P +T++VVQKRHHTRLF  +  +R  V +SGN+  GT VDS I HP+EFDFYLCSHAGIQGTSRP+
Sbjct:  481 SPQTLSNLCLKINAKLGGINNVLVP---HQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDG-HPSRYCATVRVQTSRQETSQELLYS-QEVIQDLTN--MVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTER--VGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPS 698          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1_MOUSE (Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.194e-55
Identity = 119/227 (52.42%), Postives = 147/227 (64.76%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     +   V  +P I  GADVTHP  G+   PSI AVV S D    ++Y   V  Q  RQE+I+DL               M++ELLI F ++T  KP RIIFYRDGV EGQ  Q+L YEL AIR AC  LE +YQP +T++VVQKRHHTRLF  + ++R  + +SGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  554 SPQTLSNLCLKINVKLGGINNILVP---HQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMD-AHPSRYCATVRVQRPRQEIIEDL-------------SYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNER--IGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPS 761          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1_HUMAN (Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 3.194e-55
Identity = 119/227 (52.42%), Postives = 147/227 (64.76%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            S   ++N+ LKINVK+GG N +LV     +   V  +P I  GADVTHP  G+   PSI AVV S D    ++Y   V  Q  RQE+I+DL               M++ELLI F ++T  KP RIIFYRDGV EGQ  Q+L YEL AIR AC  LE +YQP +T++VVQKRHHTRLF  + ++R  + +SGNI  GT VD+ I HP EFDFYLCSHAGIQGTSRP+
Sbjct:  554 SPQTLSNLCLKINVKLGGINNILVP---HQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMD-AHPSRYCATVRVQRPRQEIIEDL-------------SYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNER--IGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPS 761          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.938e-52
Identity = 108/229 (47.16%), Postives = 147/229 (64.19%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATG-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +++  ++ NV LKIN K+GG N++L    S  IPLVS  PTII G DV+H  PG+   PSIAAVV+S++WP V+KY   V +Q+ + E+I  LFK    P       G+I+ELL+ F  +TG +KP ++I +RDGVSE QF QVL  ELD I +AC  L+ N+ P  T +V QK HHT+ F     +        N+ PGTVVD+ +CHP   DFY+C+HAG+ GT+RP
Sbjct:  593 RVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFK----PQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQN--------NVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRP 809          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.256e-51
Identity = 104/229 (45.41%), Postives = 145/229 (63.32%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATG-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +++  ++ N+ LKIN K+GG N++L    S  IPLVS  PTII G DV+H  PG+   PSIAAVV+S+ WP ++KY   V  Q+ + E++  LFK      RG    G+I+E LI F  ++G +KP  +I +RDGVSE QF QV+  ELD I +AC  L+  + P  T +V QK HHT+ F +   D        N+ PGTVVD ++CHP  +DFY+C+HAG+ GT+RP
Sbjct:  601 RVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKP-----RGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPD--------NVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRP 816          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.622e-46
Identity = 103/229 (44.98%), Postives = 139/229 (60.70%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +M+  +  NV LKIN K+GG N+ L       IP+V+  PT+I G DV+H  PG    PSIAAVV S+ WP +++Y   V  Q+ + E+I  LFK    P+      G+I+ELL+ F + + Q KP++II +RDGVSE QF QVL  EL+ I KA   ++    P  T ++ QK HHT+LF  N  D        N+ PGTVVDS I HP ++DFY+ +HAG  GTSRP
Sbjct:  572 KMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVNQTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFK----PLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLFQENTPD--------NVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRP 788          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO2_ORYSJ (Protein argonaute 2 OS=Oryza sativa subsp. japonica GN=AGO2 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.345e-45
Identity = 105/228 (46.05%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            Q    +M+N+ALKIN K+GG N   +      +P +S  P +  GADV HP PG   SPSIAAVVAS D    +KY   + AQ HR E+IQ L             G M KEL+  F +    KPQRII++RDGVS+GQF  VL  EL  + KA  + +  Y P +T +V +KRHHTRLF  + + +    ++GN+LPGTVVD+ +  P  +DFYLCSH G+ GTSRP
Sbjct:  727 QGQDQYMSNLALKINGKIGGSN---IQLFGESLPRISGAPYMFIGADVNHPSPGNVESPSIAAVVASVD-QGASKYVPRIRAQPHRCEVIQHL-------------GDMCKELIGVFEKRNRVKPQRIIYFRDGVSDGQFDMVLNEELADMEKAIKTKD--YSPTITVIVAKKRHHTRLFPKDLNQQQT--KNGNVLPGTVVDTGVVDPAAYDFYLCSHNGLIGTSRP 933          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.942e-44
Identity = 100/233 (42.92%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASL-----EPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +++  ++ NV LKIN K+GG N++L    ++ IPL+S  PTII G DV+H  PG D  PS+AAVV+S +WP ++KY   VC Q+ R E+I  LFK     + G     +I+E L+ F  ++         ++DGVSEGQF QVL  EL  I KAC  L     +  + P  T +V QK HHT+ F  +  ++       N+ PGTVVD  ICHP   DFY+C+HAG+ GT+RP
Sbjct:  582 KINDQYLTNVLLKINAKLGGLNSLLQIERNQAIPLLSKTPTIILGMDVSHGSPGRDDVPSVAAVVSSLEWPLISKYKASVCTQSPRLEMIDSLFK-----LVGNEDHVIIRESLMDFYNSSRG-------HKDGVSEGQFNQVLNIELAQIIKACEFLANEKNDSEWSPKFTVIVAQKNHHTKFFQTDRSNKVV-----NVPPGTVVDKGICHPRNCDFYMCAHAGMIGTTRP 797          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: TAG76_CAEEL (Putative protein tag-76 OS=Caenorhabditis elegans GN=tag-76 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.644e-43
Identity = 98/225 (43.56%), Postives = 142/225 (63.11%), Query Frame = 3
Query:   27 ANVALKINVKVGGRNT-VLVDAISRRIPLVSDRPTIIFGADVTHPHPGED--SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            AN+ LK+N+K+GG N+ ++ D I+ +   + D+PT++ G DVTHP   E   + PS+AA+VA+ D    +  A +   +  R+ ++  L                I+E +I+F R T QKP RII YRDGVSEGQF +VL  E+ +IR AC ++  +++PP+T++VVQKRHH R+F    +D   V ++ N+ PGT VD+ I  P  FDFYLCSH G+QGTSRPA
Sbjct:  705 ANIVLKLNMKMGGINSRIVADKITNKY--LVDQPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKKCRESVVYLL--------------DAIRERIITFYRHTKQKPARIIVYRDGVSEGQFSEVLREEIQSIRTACLAIAEDFRPPITYIVVQKRHHARIFCKYQND--MVGKAKNVPPGTTVDTGIVSPEGFDFYLCSHYGVQGTSRPA 911          
The following BLAST results are available for this feature:
BLAST of FC920761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
AGO4_MOUSE3.194e-5553.30Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2... [more]
AGO4_CHICK3.194e-5553.30Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=... [more]
AGO1_MOUSE3.194e-5552.42Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1... [more]
AGO1_HUMAN3.194e-5552.42Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1... [more]
AGO4A_ORYSJ1.938e-5247.16Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ1.256e-5145.41Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ4.622e-4644.98Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO2_ORYSJ1.345e-4546.05Protein argonaute 2 OS=Oryza sativa subsp. japonic... [more]
AGO15_ORYSJ1.942e-4442.92Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
TAG76_CAEEL1.644e-4343.56Putative protein tag-76 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F12EF RVDevelop1 Citrus clementina cDNA clone C32012F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920761 ID=FC920761; Name=FC920761; organism=Citrus clementina; type=EST; length=692bp
GTTTTCAAATGAGCAAGCACCACATGGCCAATGTGGCTTTGAAGATAAAT
GTGAAGGTTGGAGGGAGGAATACTGTGCTTGTTGATGCAATATCAAGGCG
TATACCTCTAGTCAGTGACAGACCCACTATCATTTTTGGTGCTGATGTCA
CCCATCCTCACCCTGGAGAGGATTCAAGCCCGTCTATTGCCGCTGTCGTA
GCTTCTCAGGATTGGCCAGAGGTCACAAAGTATGCTGGATTGGTTTGTGC
TCAAGCTCATAGGCAGGAGCTCATTCAAGACTTGTTCAAGACATGGCAGG
ATCCTGTAAGAGGAGCAGTGTCTGGTGGGATGATCAAGGAACTCCTTATA
TCTTTCCGTAGAGCTACTGGACAAAAGCCTCAGCGCATAATCTTTTACAG
GGATGGTGTCAGTGAAGGACAGTTCTATCAAGTATTATTGTATGAACTTG
ATGCTATCCGTAAGGCATGCGCCTCCTTGGAACCAAACTATCAGCCTCCT
GTGACTTTTGTTGTGGTTCAGAAGCGTCACCACACTAGGTTGTTTGCCAA
CAACCATCATGATCGCAATGCAGTTGACAGGAGTGGAAATATATTGCCTG
GTACTGTTGTGGATTCAAAAATTTGTCACCCAACTGAGTTTGACTTTTAC
CTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCC
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