FC920761

Overview
NameFC920761
Unique NameFC920761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PIWL2_HUMAN (Piwi-like protein 2 OS=Homo sapiens GN=PIWIL2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 70/220 (31.82%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   33 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTH-PHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            + L+IN K+GG      +     IPL   +  ++ G DV H P  G     S+   VAS +   +TK+   V  Q   QE++        D ++  + G + K     F       P++I+ YRDGVS+GQ   V  YE+  ++K   + E NYQP +   VVQK+  T L+        A        PGTVVD  I      DFYL +H   QG   P
Sbjct:  717 ILLQINCKLGG------ELWGVDIPL---KQLMVIGMDVYHDPSRG---MRSVVGFVASINLT-LTKWYSRVVFQMPHQEIV--------DSLKLCLVGSLKK-----FYEVNHCLPEKIVVYRDGVSDGQLKTVANYEIPQLQKCFEAFE-NYQPKMVVFVVQKKISTNLYL------AAPQNFVTPTPGTVVDHTITSCEWVDFYLLAHHVRQGCGIP 903          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PIWI1_SCHMD (Piwi-like protein 1 OS=Schmidtea mediterranea GN=wi-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 3
Query:  123 PTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQ-PPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            PT+I G D  H   G+ S  +    ++++     ++Y   V +   + E  ++L K +                L +F+      P R+I YRDGV + Q      +E DA+ K    +  N   P + +VVV+KR   + F +            N  PGTVVD KI  P  ++FYL S    +GT+ P
Sbjct:  562 PTMIVGLDTFHSKTGKRSVQASVFSISAK----FSQYISFVNSSKGKNEFHENLGKNFLTA-------------LTTFQNKFNTMPLRLIIYRDGVGDSQLAFTKKFETDAVMKMIEKIYENQTLPQIIYVVVKKRISVKFFKD----------GANPNPGTVVDEKIVKPNFYEFYLVSQKTTKGTASP 724          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PIWI2_SCHMD (Piwi-like protein 2 OS=Schmidtea mediterranea GN=wi-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 57/193 (29.53%), Postives = 88/193 (45.60%), Query Frame = 3
Query:  120 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQ---PPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            RPT+I G D  H    + S  SI A V S +       + +V +   RQE  + L K +                L  F++     PQRI+ +RDGV + Q      +E+DA++    ++        P + +V+V+KR  T+LF          +R  N  PGTVVD +I  P  ++F+L S    +GT+ P
Sbjct:  584 RPTMIVGMDTYH---NKSSKKSIQASVFSINSTFTQYMSFVVNSPKGRQEFHETLGKNFN-------------LALEDFKKRYDILPQRILVFRDGVGDNQLQFTKNFEVDAMKPLIENIYKGNGFPVPQIIYVIVKKRVGTKLF----------NRGNNPNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATP 750          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PIWL2_MOUSE (Piwi-like protein 2 OS=Mus musculus GN=Piwil2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 68/220 (30.91%), Postives = 98/220 (44.55%), Query Frame = 3
Query:   33 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTH-PHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            + L++N K+GG      +     IPL   +  ++ G DV H P  G     S+   VAS +   +TK+   V  Q   QE++        D ++  + G + K     +       P++I+ YRDGVS+GQ   V  YE+  ++K C     NY P +   VVQK+  T L+        A D      PGTVVD  I      DFYL +H   QG   P
Sbjct:  715 ILLQMNCKLGG------ELWGVDIPL---KQLMVIGMDVYHDPSRG---MRSVVGFVASINLT-LTKWYSRVVFQMPHQEIV--------DSLKLCLVGSLKK-----YYEVNHCLPEKIVVYRDGVSDGQLKTVANYEIPQLQK-CFEAFDNYHPKMVVFVVQKKISTNLYL------AAPDHFVTPSPGTVVDHTITSCEWVDFYLLAHHVRQGCGIP 901          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PIWL2_XENTR (Piwi-like protein 2 OS=Xenopus tropicalis GN=piwil2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 65/220 (29.55%), Postives = 93/220 (42.27%), Query Frame = 3
Query:   33 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTH-PHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            + L+IN K+GG      +     IPL S    ++ G DV H P  G  S     A + S     +T +   V  Q   QE++  L                +   L  F       P++I+ YRDGVS+GQ   V  YE+  + + C     NY P +  +VVQKR  T L++       A  +     PGTV+D  + +    DF+L SH   QG   P
Sbjct:  693 ILLQINCKLGG------ELWGVDIPLKS---VMVIGMDVYHDPSRGMRSVLGFVASINSC----LTAWYSRVVFQLPNQEIMDSLKLC-------------LVAALQKFFEVNHSLPEKIVVYRDGVSDGQLNTVENYEIPQL-QTCFQTFDNYNPRMVVIVVQKRVSTNLYS------TATGQFLTPQPGTVIDHTVTNRKWIDFFLMSHHVRQGCGIP 879          
The following BLAST results are available for this feature:
BLAST of FC920761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PIWL2_HUMAN3.343e-1231.82Piwi-like protein 2 OS=Homo sapiens GN=PIWIL2 PE=2... [more]
PIWI1_SCHMD4.367e-1227.89Piwi-like protein 1 OS=Schmidtea mediterranea GN=w... [more]
PIWI2_SCHMD1.271e-1129.53Piwi-like protein 2 OS=Schmidtea mediterranea GN=w... [more]
PIWL2_MOUSE2.167e-1130.91Piwi-like protein 2 OS=Mus musculus GN=Piwil2 PE=1... [more]
PIWL2_XENTR6.305e-1129.55Piwi-like protein 2 OS=Xenopus tropicalis GN=piwil... [more]

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Properties
Property NameValue
Genbank descriptionC32012F12EF RVDevelop1 Citrus clementina cDNA clone C32012F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920761 ID=FC920761; Name=FC920761; organism=Citrus clementina; type=EST; length=692bp
GTTTTCAAATGAGCAAGCACCACATGGCCAATGTGGCTTTGAAGATAAAT
GTGAAGGTTGGAGGGAGGAATACTGTGCTTGTTGATGCAATATCAAGGCG
TATACCTCTAGTCAGTGACAGACCCACTATCATTTTTGGTGCTGATGTCA
CCCATCCTCACCCTGGAGAGGATTCAAGCCCGTCTATTGCCGCTGTCGTA
GCTTCTCAGGATTGGCCAGAGGTCACAAAGTATGCTGGATTGGTTTGTGC
TCAAGCTCATAGGCAGGAGCTCATTCAAGACTTGTTCAAGACATGGCAGG
ATCCTGTAAGAGGAGCAGTGTCTGGTGGGATGATCAAGGAACTCCTTATA
TCTTTCCGTAGAGCTACTGGACAAAAGCCTCAGCGCATAATCTTTTACAG
GGATGGTGTCAGTGAAGGACAGTTCTATCAAGTATTATTGTATGAACTTG
ATGCTATCCGTAAGGCATGCGCCTCCTTGGAACCAAACTATCAGCCTCCT
GTGACTTTTGTTGTGGTTCAGAAGCGTCACCACACTAGGTTGTTTGCCAA
CAACCATCATGATCGCAATGCAGTTGACAGGAGTGGAAATATATTGCCTG
GTACTGTTGTGGATTCAAAAATTTGTCACCCAACTGAGTTTGACTTTTAC
CTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCC
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