FC920766

Overview
NameFC920766
Unique NameFC920766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14150 contig Ccv1_Contig14150:13..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.122e-99
Identity = 173/192 (90.10%), Postives = 180/192 (93.75%), Query Frame = 3
Query:   84 GKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            GKAV L PS  E+G   R+SMRKT +K VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAF
Sbjct:   16 GKAVKLGPSAPEVG---RVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 204          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.465e-99
Identity = 172/194 (88.66%), Postives = 180/194 (92.78%), Query Frame = 3
Query:   84 GKAVNLAPSGNELGNGGRISMRKTASK--SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            GKAV L P+ +E+   GRI+MRKTA K  +V S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:   15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.569e-99
Identity = 171/196 (87.24%), Postives = 182/196 (92.86%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAVN+ PS +++   G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:   13 FAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 207          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 7.273e-99
Identity = 169/196 (86.22%), Postives = 182/196 (92.86%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAV L+PS +E+   G+++MRKTASK+  VSS SPWYGP+RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.764e-98
Identity = 168/196 (85.71%), Postives = 180/196 (91.84%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GK V L+PS +E+   G+ +MRKTA+K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAF
Sbjct:   13 FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 6.157e-98
Identity = 167/196 (85.20%), Postives = 179/196 (91.33%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAV L+ S +E+   G+++MRKT +K+   SS SPWYGPDRVKYLGP SGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:   13 FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 8.041e-98
Identity = 173/197 (87.82%), Postives = 180/197 (91.37%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAVN+  S        R++MRKTA+K+    +SGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:   13 FAGKAVNVPSSSF---GEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 206          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.050e-97
Identity = 168/196 (85.71%), Postives = 180/196 (91.84%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAVN+ PS +E+   G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:   13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 207          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 6.807e-97
Identity = 171/197 (86.80%), Postives = 180/197 (91.37%), Query Frame = 3
Query:   78 FVGKAVNLAPSGNELGNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            F GKAVN+  S   L    R++MRKTA+K+    SSGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAF
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAF 206          
BLAST of FC920766 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 1.981e-96
Identity = 169/186 (90.86%), Postives = 176/186 (94.62%), Query Frame = 3
Query:  102 APSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 659
            +PS  +LG G R+SMRKTASK+VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAF
Sbjct:    2 SPSTPQLGVG-RVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAF 186          
The following BLAST results are available for this feature:
BLAST of FC920766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB23_SOYBN1.122e-9990.10Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2A_SPIOL1.465e-9988.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP5.569e-9987.24Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL7.273e-9986.22Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PETSP2.764e-9885.71Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_PETSP6.157e-9885.20Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_MAIZE8.041e-9887.82Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PETSP1.050e-9785.71Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB29_MAIZE6.807e-9786.80Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_SOYBN1.981e-9690.86Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionC32012G08EF RVDevelop1 Citrus clementina cDNA clone C32012G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920766 ID=FC920766; Name=FC920766; organism=Citrus clementina; type=EST; length=660bp
CTGCTCTTGCTTCCACAACTTCTGCTTCTGAATTAAATTCCGCAATGGCC
ACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCT
TGCCCCTTCAGGCAATGAGCTGGGCAATGGTGGCCGCATCTCCATGCGTA
AAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGAC
AGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGAC
CGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTG
ACCCAGAAACCTTTGCCAAGAACCGCGAACTCGAAGTCATCCACTGCAGA
TGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCG
CAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCAGGAGCTCAGA
TCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCAC
GCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTATTGATGGGAGC
CGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACC
CATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCG
GAAGCTTTTG
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