FC920768

Overview
NameFC920768
Unique NameFC920768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_BRAJA (Electron transfer flavoprotein subunit beta OS=Bradyrhizobium japonicum GN=etfB PE=3 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 3.463e-71
Identity = 139/201 (69.15%), Postives = 164/201 (81.59%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            MK++V +KRVVDY VK+RVK D +GVE  NVKMSMNPF EIA+EEALR+KE G A+EVV VS+GPAQ  +T+RTGLAMGADRG+ V+A G + PL VAKILK + E E+PGLIILGKQAIDDD NQTGQM+A LL W Q TFASK  L+ E     V REVDGGL+T++L  PA++TTDLRLN+PRYA+LPNIMKAK KPI
Sbjct:    1 MKVLVPVKRVVDYNVKVRVKGDGSGVELANVKMSMNPFDEIAVEEALRLKEGGKATEVVVVSIGPAQASETIRTGLAMGADRGILVKAEGTVEPLAVAKILKKVAEEEQPGLIILGKQAIDDDSNQTGQMLAALLGWSQATFASK--LEVEGSDFKVTREVDGGLQTVKLKGPAIVTTDLRLNEPRYASLPNIMKAKKKPI 199          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_PSEAE (Electron transfer flavoprotein subunit beta OS=Pseudomonas aeruginosa GN=etfB PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.984e-68
Identity = 128/206 (62.14%), Postives = 167/206 (81.07%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            MK++VA+KRVVDY VK+RVK+D +GV+  NVKMSMNPFCEIA+EEA+R+KE G+A+E+VAVS+GP    + LRT LA+GADR + VE+  +L  L VAK+LK++V+ E+P L+ILGKQAID D NQTGQM+A L  + QGTFASKV +  +K    V RE+DGGL+T+ L+LPA++TTDLRLN+PRYA+LPNIMKAK KP+  + P
Sbjct:    1 MKVLVAVKRVVDYNVKVRVKADNSGVDLANVKMSMNPFCEIAVEEAVRLKEKGVATEIVAVSVGPTAAQEQLRTALALGADRAILVESNDELNSLAVAKLLKAVVDKEQPQLVILGKQAIDSDNNQTGQMLAALTGYAQGTFASKVEVAGDK--VNVTREIDGGLQTVALNLPAIVTTDLRLNEPRYASLPNIMKAKKKPLDVVTP 204          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_PARDE (Electron transfer flavoprotein subunit beta OS=Paracoccus denitrificans GN=etfB PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.458e-61
Identity = 124/205 (60.49%), Postives = 154/205 (75.12%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            MK++V +KR++DY VK RVKSD +GV+  NVKMSMNPF EIA+EEA+R+KE G A E++AVS+G  Q  +TLRT LAMGADR + V AA      + PL VAKIL ++   E   LII GKQAID+D N TGQM+A +L W Q TFASKV ++  K  A V REVDGGL+T+ + LPAV+T DLRLN+PRYA+LPNIMKAK KP+
Sbjct:    1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAK--AKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPL 203          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_YEAST (Probable electron transfer flavoprotein subunit beta OS=Saccharomyces cerevisiae GN=YGR207C PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.787e-51
Identity = 109/210 (51.90%), Postives = 146/210 (69.52%), Query Frame = 1
Query:   25 EMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESG--LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ--LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV-VLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            +++I+V +KRVVD+ +K RV    TG+ET+ +K S+NPF +IA+EEA+RIKE    L     AVS+G A+  D LR  LA G D    +++ G+  + PL +AKILK++VE +   L+++GKQAIDDDCN TGQM+AGLL+WPQ T A+KV  LD  +    V RE+D G E +E  LP VITTDLRLN PRY  LP +MKAK KPI+ +
Sbjct:    6 QLRILVPVKRVVDFQIKPRVNKTLTGIETSGIKFSINPFDDIAVEEAIRIKEKNKSLVESTHAVSIGSAKAQDILRNCLAKGIDTCSLIDSVGKENIEPLAIAKILKAVVEKKGSNLVLMGKQAIDDDCNNTGQMLAGLLNWPQATNAAKVEFLDNGR--VQVTREIDDGEEVIEASLPMVITTDLRLNTPRYVGLPKLMKAKKKPIEKL 213          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_SCHPO (Probable electron transfer flavoprotein subunit beta OS=Schizosaccharomyces pombe GN=SPAC1805.02c PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 99/211 (46.92%), Postives = 142/211 (67.30%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKES--GLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            ++++I+V +KR +DY +K R+ + +T V+ +  KMS+NPFC+IA+EEA+R+KE+      + + V+ G       LR  LA G  R   +     +L PL+VAK+LK+ VE EK  L++LGKQAIDDD +QTG M+A +L WPQ T ASKV ++ +K   +V RE+DGG ETL   LPA+ITTDLRLN PR+A L  +MKA+  P+  + P
Sbjct:    2 SKIRILVGVKRTLDYMLKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETLKNRIEDTLVVTAGQTSSEPILRQCLAKGIGRAALINVGEKELEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGDK--VIVTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAKVMKARKAPLGKMSP 210          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_METME (Electron transfer flavoprotein subunit beta OS=Methylophilus methylotrophus GN=etfB PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 74/208 (35.58%), Postives = 120/208 (57.69%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLAS-EVVAVSMGPAQCVDTLRTGLAMGADRGVHV--EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGG-LETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            MKI+VA+K+         ++ D   V+ + +   +N + + +LEEA++IKES     EVV VS+GP +  ++LR  LA GADR V V  +AA     + V +IL  +++ E P ++  G Q+ D     TG  VA  L+WP     + +        A++ RE++GG L+ +E++ PAV+T  L +N+PRYA+L  I +A +KPI+ +
Sbjct:    1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEV 208          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_BACSU (Electron transfer flavoprotein subunit beta OS=Bacillus subtilis GN=etfB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 66/207 (31.88%), Postives = 115/207 (55.56%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYP---LTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            M + V +KR  D   KI +++ +  ++ +  +  +NP+ E A+EEA+++KE      + AV++G  +    LRT LAMG D+ V +     L      +++++L   ++ ++  LI+ G  AID    Q    +A LL  P  T  +K+ ++     A  ER+V+G +E ++  LP ++T    LN+PRY +LP IMKAK KP++ +
Sbjct:    1 MNLFVLMKRTFDTEEKIVIETGK--IQDDGAEWIINPYDEYAIEEAIQLKEKH-GGTITAVTVGGEEAEKELRTALAMGCDQAVLINIEDDLDEPDQYSISQVLYHYMKDQEFDLILGGNVAIDGGSGQVAPRLAELLDIPCITTITKLEINGTD--AEAERDVEGDVEKIKTTLPLLVTAQQGLNEPRYPSLPGIMKAKKKPLEEL 202          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_MEGEL (Electron transfer flavoprotein subunit beta OS=Megasphaera elsdenii GN=etfB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 77/215 (35.81%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGAD----------RGVHVEAAGQLYPLTVA-KILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            M+I+V +K+V D A ++++   +  V    V    NPF + ALE AL +K++    ++  +SMGP Q  D LR GLAMGAD           G    A G  Y L  A K L +   +E+  +I+ GKQAID D  Q G  +A  L  PQ T+A  + ++ +K    V++E + G    E   P +IT    LN+PR+ T+   MKAK + I N+
Sbjct:    1 MEILVCVKQVPDTA-EVKIDPVKHTVIRAGVPNIFNPFDQNALEAALALKDADKDVKITLLSMGPDQAKDVLREGLAMGADDAYLLSDRKLGGSDTLATG--YALAQAIKKLAADKGIEQFDIILCGKQAIDGDTAQVGPQIACELGIPQITYARDIKVEGDK--VTVQQENEEGYIVTEAQFPVLITAVKDLNEPRFPTIRGTMKAKRREIPNL 210          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_CLOTS (Electron transfer flavoprotein subunit beta OS=Clostridium thermosaccharolyticum GN=etfB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 73/209 (34.93%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVE----AAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNIL 642
            M I+V IK+V D   ++R+      +    V   +NP  + ALEEA+RI+E  +  +V  +SMGP Q    LR  LAMGAD    +     A    Y    AK L   +E  +  ++  G+QAID D  Q G  +A  L  PQ T+  KV ++ +K   +VER ++ G E +E+  P ++T    LN PRY ++  I  A +K    IL
Sbjct:    1 MNILVLIKQVPD-TNEVRIDPVTKTLIREGVPSIINPDDKNALEEAIRIREK-VGGKVTVISMGPTQAEVALREALAMGADEAYLLTDRAFAGADTY--ATAKALSKAIEKFQYDIVFCGRQAIDGDTAQVGPQIAEQLDIPQVTYVRKVEIEGDK--LIVERALEDGYEIIEVKTPVLLTAIKELNVPRYPSIKGIFNAYNKKEVKIL 203          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_CLOAB (Electron transfer flavoprotein subunit beta OS=Clostridium acetobutylicum GN=etfB PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 66/204 (32.35%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV--EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 633
            M I+V +K+V D A ++R+   +  +    V   +NP  + ALEEAL +K++   + V  +SMGP Q  + L   LAMGAD  V +   A G    L  +  + + ++  K  ++  G+QAID D  Q G  +A  L  PQ T+  KV +D +     + +  + G E +E+  P ++T    LN PRY ++  I  A  K +K
Sbjct:    1 MNIVVCLKQVPDTA-EVRIDPVKGTLIREGVPSIINPDDKNALEEALVLKDN-YGAHVTVISMGPPQAKNALVEALAMGADEAVLLTDRAFGGADTLATSHTIAAGIKKLKYDIVFAGRQAIDGDTAQVGPEIAEHLGIPQVTYVEKVEVDGD--TLKIRKAWEDGYEVVEVKTPVLLTAIKELNVPRYMSVEKIFGAFDKEVK 200          
The following BLAST results are available for this feature:
BLAST of FC920768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ETFB_BRAJA3.463e-7169.15Electron transfer flavoprotein subunit beta OS=Bra... [more]
ETFB_PSEAE7.984e-6862.14Electron transfer flavoprotein subunit beta OS=Pse... [more]
ETFB_PARDE1.458e-6160.49Electron transfer flavoprotein subunit beta OS=Par... [more]
ETFB_YEAST1.787e-5151.90Probable electron transfer flavoprotein subunit be... [more]
ETFB_SCHPO7.769e-4746.92Probable electron transfer flavoprotein subunit be... [more]
ETFB_METME2.126e-2835.58Electron transfer flavoprotein subunit beta OS=Met... [more]
ETFB_BACSU5.071e-2231.88Electron transfer flavoprotein subunit beta OS=Bac... [more]
ETFB_MEGEL6.623e-2235.81Electron transfer flavoprotein subunit beta OS=Meg... [more]
ETFB_CLOTS1.475e-2134.93Electron transfer flavoprotein subunit beta OS=Clo... [more]
ETFB_CLOAB1.994e-1832.35Electron transfer flavoprotein subunit beta OS=Clo... [more]

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Properties
Property NameValue
Genbank descriptionC32012G10EF RVDevelop1 Citrus clementina cDNA clone C32012G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920768 ID=FC920768; Name=FC920768; organism=Citrus clementina; type=EST; length=728bp
AGTATCATCGGCATCACGGCAGCCGAAATGAAGATAATGGTGGCAATAAA
GCGAGTCGTTGACTACGCCGTCAAGATCAGGGTGAAATCCGACAGGACAG
GAGTGGAGACAAACAACGTTAAGATGTCGATGAACCCCTTTTGCGAGATA
GCGCTGGAGGAGGCTCTGAGGATCAAGGAATCTGGATTGGCTTCCGAGGT
TGTCGCCGTCAGCATGGGCCCCGCCCAGTGCGTTGATACTCTACGGACGG
GTTTAGCTATGGGTGCTGATAGAGGAGTCCACGTGGAGGCTGCCGGTCAG
CTGTATCCTTTGACTGTTGCCAAGATTTTGAAGAGCCTTGTTGAGGTTGA
GAAGCCTGGCTTGATTATTCTGGGAAAGCAGGCAATTGATGATGACTGCA
ATCAAACAGGGCAAATGGTTGCAGGGCTACTCAGCTGGCCGCAGGGAACC
TTTGCTTCTAAGGTTGTGCTGGATAAGGAAAAACAATTAGCAATGGTGGA
GAGAGAAGTAGATGGTGGTCTTGAGACTTTAGAATTGGATTTACCAGCTG
TAATCACCACTGATTTGAGACTCAACCAACCGAGGTACGCGACACTCCCC
AACATAATGAAGGCAAAATCGAAACCAATAAAGAATATACTCCCCAGGAG
CTAAACGTGGATGTCAAATCTGATTTGGAGGTGATTCAAGTACAGAACCT
CCCAGAGAAAAGCTGGGTTATATTATCT
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