FC920768

Overview
NameFC920768
Unique NameFC920768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12898 contig Ccv1_Contig12898:685..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_AZOVI (Protein fixA OS=Azotobacter vinelandii GN=fixA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 68/209 (32.54%), Postives = 103/209 (49.28%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAK------ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 633
            M  +V IK++ D A +IRV      +    V   +NP+   ALEEALR+K+      V  V+MGP      LR  L+ GAD  + V         T+A       +++ ++E     LI  GKQ ID D  Q G  +A  L +   T+ S++V +D  K+   VER  +GG++ LE  LP +IT     N+ R+  L ++ +A    +K
Sbjct:    1 MHSVVCIKQLPDSA-QIRVHPVTNTIMRQGVPAIINPYDLFALEEALRLKDK-FGGTVTVVTMGPPMAEAALRKCLSFGADDAILVSDRAFAGSDTLATSYALSAVIRKIMEDMPVDLIFTGKQTIDGDTAQVGPGIAKRLDYQLLTYVSRIVDVDTAKKEIQVERRAEGGVQLLETSLPCLITMLEGTNEMRFGDLDDLFRAARHELK 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_MYCTU (Electron transfer flavoprotein subunit beta OS=Mycobacterium tuberculosis GN=etfB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 62/206 (30.10%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   34 IMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKES----GLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAK---ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            I+V IK+V D   + ++      ++       ++   E A+EEAL+I+E     G+   V  ++ GP +  + +R  L+MGAD+ VH++  G      +     + ++L  +E   L+I G ++ D        ++A  L  PQ T   KV ++  K     ERE D G+ TLE  LPAVI+ + ++N+PR+ +   IM AK K +
Sbjct:    4 IVVLIKQVPDTWSERKLTDGDFTLDREAADAVLDEINERAVEEALQIREKEAADGIEGSVTVLTAGPERATEAIRKALSMGADKAVHLKDDGMHGSDVIQTGWALARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYLGLPQLTHLRKVSIEGGKITG--ERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMAAKKKEV 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_MYCBO (Electron transfer flavoprotein subunit beta OS=Mycobacterium bovis GN=etfB PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 62/206 (30.10%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   34 IMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKES----GLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAK---ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            I+V IK+V D   + ++      ++       ++   E A+EEAL+I+E     G+   V  ++ GP +  + +R  L+MGAD+ VH++  G      +     + ++L  +E   L+I G ++ D        ++A  L  PQ T   KV ++  K     ERE D G+ TLE  LPAVI+ + ++N+PR+ +   IM AK K +
Sbjct:    4 IVVLIKQVPDTWSERKLTDGDFTLDREAADAVLDEINERAVEEALQIREKEAADGIEGSVTVLTAGPERATEAIRKALSMGADKAVHLKDDGMHGSDVIQTGWALARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYLGLPQLTHLRKVSIEGGKITG--ERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMAAKKKEV 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_MYCLE (Electron transfer flavoprotein subunit beta OS=Mycobacterium leprae GN=etfB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 59/206 (28.64%), Postives = 104/206 (50.49%), Query Frame = 1
Query:   34 IMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKES----GLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAK---ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            I+V IK+V D   + ++      ++       ++   E A+EEAL+I+E     G+   V  ++ GP +  + +R  L+MGAD+ VH++  G      +     + ++L  +E   L+I G ++ D        ++A  L  PQ T    + ++  K     ERE D G+ TLE  LPAV++ + ++N+PR+ +   IM AK K +
Sbjct:    4 IVVLIKQVPDTWSERKLTDGDFTLDREAADAVLDEINERAVEEALQIREKEAVDGIKGSVTVLTAGPERATEAIRKALSMGADKAVHLKDDGMHGSDVIQTGWALARALGTIEGTELVIAGNESTDGVGGVVPAIIAEYLGLPQLTHLRTISVEGGKITG--ERETDEGVFTLEAVLPAVVSVNEKINEPRFPSFKGIMAAKKKEV 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_RHISN (Protein fixA OS=Rhizobium sp. (strain NGR234) GN=fixA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 68/212 (32.08%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGV-----HVEAAGQL-----YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            M I+V IK+V D A +IRV      +    V   +NP+   ALE+AL++++     EV  ++MGP    ++LR  L  GADR +     H   +  L         +AKI  S      P ++  GKQ ID D  Q G  +A  L   Q T+ +KV  +D   +   VER  +GG   L+ +LP +IT     N  R  +L + ++A    I
Sbjct:    1 MHIVVCIKQVPDSA-QIRVHPVTNTIMRQGVPTIINPYDLFALEQALQVRDHH-GGEVTVLTMGPPMAEESLRKALTYGADRAILLTDRHFAGSDTLATSFALSQAIAKIGNSF---GSPDIVFTGKQTIDGDTAQVGPGIAKRLDLVQLTYVAKVTSIDLRTRAITVERRAEGGTHVLKSELPCLITMLEGSNAIRRGSLDDALRAARSEI 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_AZOC5 (Protein fixA OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=fixA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV--------EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKA 615
            M I+V IK+V D A +IRV      +    V   +NP+   ALE AL +++     EV  ++MGP    D+LR  L  GADR V +        +     Y L  A + K       P ++  GKQ ID D  Q G  +A  L   Q T+ +K+  +D   +   VER  +GG++ L+  LP +IT     N+ R   + + ++A
Sbjct:    1 MHIVVCIKQVPDSA-QIRVHPVTNTIMRQGVPTIINPYDLFALEAALALRDQH-GGEVTVLTMGPPSAEDSLRKALTFGADRAVLLTDRFFAGSDTLATTYALATA-VRKIGETFGAPDIVFTGKQTIDGDTAQVGPGIAKRLGLLQLTYVAKIANVDLAGRSIQVERRSEGGVQVLQTRLPCLITMLEATNEIRRGAMADALRA 202          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_RHIME (Protein fixA OS=Rhizobium meliloti GN=fixA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 61/185 (32.97%), Postives = 92/185 (49.73%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV---EAAGQLYPLTVAKILKSLVEVEK----PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLAMVEREVDGGLETLELDLPAVIT 558
            M ++V IK+V D A +IRV      +    V   +NP    ALEEAL++ ++    EV  V+MGP    D LR  L  GA R V +     AG     T   + +++ E+ +    P ++  GKQ ID D  Q G  +A  L   Q T+ +K++ +D   +   VER  +GG + L   LP ++T
Sbjct:    1 MHLVVCIKQVPDSA-QIRVHPVTNTIMRQGVPTIINPHDLAALEEALKLCDT-YGGEVTVVTMGPKMAEDALRKALTFGAHRAVLLTDRHFAGSDTLATSFALAQAIAEIGETFGTPDVVFTGKQTIDGDTAQVGPGIAKRLDLQQLTYVAKILSIDAASREITVERRAEGGSQILRTGLPCLVT 183          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_BRAJA (Protein fixA OS=Bradyrhizobium japonicum GN=fixA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 68/212 (32.08%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV--------EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV-VLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMK-AKSKPIK 633
            M  +V IK+V D A +IRV      +    V   +NP+   ALE AL +++     E+  ++MGP    ++LR  L  GADR V +        +     Y L  A I K   E     LI  GKQ ID D  Q G  +A  L   Q T+ +KV  +D   +    ER  +GG++ L   LP +IT     NQ R   + + ++ A++K +K
Sbjct:    1 MHNIVCIKQVPDSA-QIRVHPVTNTIMRQGVPTIINPYDLFALEAALGLRDR-FGGEITVLTMGPPSAEESLRKALTYGADRAVLLTDRCFAGSDTLATTYALATA-IRKIGKEYGPANLIFTGKQTIDGDTAQVGPGIAKRLGVGQLTYVAKVRSVDVANETIEAERRSEGGVQVLHTRLPCLITMLEATNQIRRGAMADALRAARAKIVK 209          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: FIXA_RHILP (Protein fixA OS=Rhizobium leguminosarum bv. phaseoli GN=fixA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA---AGQLYPLTVAKILKSLVEVEK----PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPI 630
            M I++ IK+V D A +IRV      +    V   +NP+   ALEE       G   EV  ++MGP    D LR  L + ADR V +     AG     T   + +++ ++ +    P ++   KQ ID D  Q G  +A  L   Q T+ +K+V +D   +   VER  +GG +TL   LP +IT     N+ R  +L + ++A    I
Sbjct:    1 MHIVICIKQVPDSA-QIRVDPVTNTIMRQGVPTIINPYDLFALEERSSCASHG--GEVTVLTMGPPMAEDALRKALTV-ADRAVLLTERHFAGSDTLATSFALSRAIAKIGEAFGTPDIVFTAKQTIDGDTAQVGPGIAKRLDLLQLTYVAKIVSVDINGREITVERRSEGGTQTLMSKLPCLITMLEGTNEIRRGSLDDALRAARSQI 205          
The following BLAST results are available for this feature:
BLAST of FC920768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FIXA_AZOVI5.802e-1832.54Protein fixA OS=Azotobacter vinelandii GN=fixA PE=... [more]
ETFB_MYCTU1.688e-1730.10Electron transfer flavoprotein subunit beta OS=Myc... [more]
ETFB_MYCBO1.688e-1730.10Electron transfer flavoprotein subunit beta OS=Myc... [more]
ETFB_MYCLE4.158e-1628.64Electron transfer flavoprotein subunit beta OS=Myc... [more]
FIXA_RHISN5.430e-1632.08Protein fixA OS=Rhizobium sp. (strain NGR234) GN=f... [more]
FIXA_AZOC51.210e-1531.71Protein fixA OS=Azorhizobium caulinodans (strain A... [more]
FIXA_RHIME7.841e-1532.97Protein fixA OS=Rhizobium meliloti GN=fixA PE=3 SV... [more]
FIXA_BRAJA2.282e-1432.08Protein fixA OS=Bradyrhizobium japonicum GN=fixA P... [more]
FIXA_RHILP1.252e-1231.10Protein fixA OS=Rhizobium leguminosarum bv. phaseo... [more]

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Properties
Property NameValue
Genbank descriptionC32012G10EF RVDevelop1 Citrus clementina cDNA clone C32012G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920768 ID=FC920768; Name=FC920768; organism=Citrus clementina; type=EST; length=728bp
AGTATCATCGGCATCACGGCAGCCGAAATGAAGATAATGGTGGCAATAAA
GCGAGTCGTTGACTACGCCGTCAAGATCAGGGTGAAATCCGACAGGACAG
GAGTGGAGACAAACAACGTTAAGATGTCGATGAACCCCTTTTGCGAGATA
GCGCTGGAGGAGGCTCTGAGGATCAAGGAATCTGGATTGGCTTCCGAGGT
TGTCGCCGTCAGCATGGGCCCCGCCCAGTGCGTTGATACTCTACGGACGG
GTTTAGCTATGGGTGCTGATAGAGGAGTCCACGTGGAGGCTGCCGGTCAG
CTGTATCCTTTGACTGTTGCCAAGATTTTGAAGAGCCTTGTTGAGGTTGA
GAAGCCTGGCTTGATTATTCTGGGAAAGCAGGCAATTGATGATGACTGCA
ATCAAACAGGGCAAATGGTTGCAGGGCTACTCAGCTGGCCGCAGGGAACC
TTTGCTTCTAAGGTTGTGCTGGATAAGGAAAAACAATTAGCAATGGTGGA
GAGAGAAGTAGATGGTGGTCTTGAGACTTTAGAATTGGATTTACCAGCTG
TAATCACCACTGATTTGAGACTCAACCAACCGAGGTACGCGACACTCCCC
AACATAATGAAGGCAAAATCGAAACCAATAAAGAATATACTCCCCAGGAG
CTAAACGTGGATGTCAAATCTGATTTGGAGGTGATTCAAGTACAGAACCT
CCCAGAGAAAAGCTGGGTTATATTATCT
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